PANCHANGE_data_preprocessing
Katie Thompson, Topher Huebel, Molly Davies, Kirstin Purves
19 November, 2020
This is the preprocessing script to prepare the data to run analyses for the project “Anxiety, depression and trauma symptom change during the COVID-19 pandemic: retrospective versus objective assessment” - Young et al (2020)
Script written by K Purves, K Thompson, C Huebel and M Davies. Email: kirstin.purves@kcl.ac.uk, katie.thompson@kcl.ac.uk, christopher.1.huebel@kcl.ac.uk, molly.davies@kcl.ac.uk
#Set up
Clear global environment
Retrieve the current date to use it for file endings to not overwrite files when one exports files
Specify cohort
#Packages Install packages (if they are not available in your version of R)
Load packages
Registered S3 method overwritten by 'pryr':
method from
print.bytes RcppFor best results, restart R session and update pander using devtools:: or remotes::install_github('rapporter/pander')Loading required package: ggplot2
Attaching package: 'ggplot2'The following objects are masked from 'package:psych':
%+%, alpha── Attaching packages ─────────────────────────────────────── tidyverse 1.3.0 ──✓ tibble 3.0.4 ✓ dplyr 1.0.2
✓ tidyr 1.1.2 ✓ stringr 1.4.0
✓ readr 1.3.1 ✓ forcats 0.5.0
✓ purrr 0.3.4 ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
x ggplot2::%+%() masks psych::%+%()
x ggplot2::alpha() masks psych::alpha()
x dplyr::filter() masks stats::filter()
x dplyr::lag() masks stats::lag()
x tibble::view() masks summarytools::view()Colour palettes
Define colours for plotting this are the standard coping colours
Choose in this chunk which palette to use 04.07.2020 - Default to 2 colour COPING palette
#Add_numeric function Function used to convert character variables into numeric variables.
Data import and merging
Note: GLAD only receives current measures and RAMP questionnaire Note: All COPING surveys are separate surveys
Source data file paths
Demographics
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
GLAD and EDGI
Create data frame
Get summary of combined GLAD and EDI
NBR
Read in data
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "subjectid"
[5] "demographics.please_select_your_preferred_units_of_measurement"
[6] "demographics.what_is_your_current_height"
[7] "demographics.what_is_your_current_height.1"
[8] "demographics.what_is_your_current_height.2"
[9] "demographics.provide_current_weight_pregnant"
[10] "demographics.provide_current_weight_pregnant.1"
[11] "demographics.provide_current_weight_pregnant.2"
[12] "demographics.provide_pregnant_weighed_weight"
[13] "demographics.provide_pregnant_weighed_weight.1"
[14] "demographics.provide_pregnant_weighed_weight.2"
[15] "demographics.highest_weight.txt"
[16] "demographics.adult_height_reaching_weighed"
[17] "demographics.adult_height_reaching_weighed.1"
[18] "demographics.adult_height_reaching_weighed.2"
[19] "demographics.adult_height_lowest_weight.txt"
[20] "demographics.are_you_claiming_a_personal_independence_payment"
[21] "demographics.are_you_registered_as_hearing_impaired"
[22] "demographics.what_is_your_religion"
[23] "demographics.assistance_carer_carry_daily"
[24] "demographics.in_which_country_do_you_currently_reside"
[25] "demographics.live"
[26] "demographics.corrected_vision_registered_select"
[27] "demographics.select_questionnaire_items_medical"
[28] "demographics.which_gender_do_you_identify_with"
[29] "demographics.which_gender_do_you_identify_with.txt"
[30] "demographics.disability"
[31] "demographics.sight_hearing_impairment_disability.txt"
[32] "demographics.day"
[33] "demographics.month"
[34] "demographics.year"
[35] "demographics.baby_pregnant_months" Select variables
[1] 173[1] "1985-03-30" "1994-08-27" "1951-12-10" "1967-08-27" "1957-08-25"
[6] "1962-11-09"Cohort information
Information on INTERVAL, COMPARE, and STRIDES http://www.donorhealth-btru.nihr.ac.uk/studies/
[1] "NBR ID" "gender" "ethnicity" "cohort"
[5] "age" "bmi" "consumes_alcohol" "smoking_status"
[9] "smoker_gave_up" [1] 0[1] 0RAMP
Read in data
Select variables
Demographics variable creation
Gender categories synchronised
RAMP has the correct Gender categories so does not need editing.
Ethnicity recoding
Clean Age variable
Age outlier
Warning: `funs()` is deprecated as of dplyr 0.8.0.
Please use a list of either functions or lambdas:
# Simple named list:
list(mean = mean, median = median)
# Auto named with `tibble::lst()`:
tibble::lst(mean, median)
# Using lambdas
list(~ mean(., trim = .2), ~ median(., na.rm = TRUE))
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.Descriptive Statistics
dem.raw.id$Age
N: 17447
Age
----------------- ----------
Mean 54.51
Std.Dev 14.27
Min 16.00
Q1 45.00
Median 57.00
Q3 66.00
Max 111.00
MAD 14.83
IQR 21.00
CV 0.26
Skewness -0.50
SE.Skewness 0.02
Kurtosis -0.52
N.Valid 17440.00
Pct.Valid 99.96Categorise age into groups
In RAMP, age is indicated categorically: 16-18, 19-25, 26-35, 36-45, 46-55, 56-65, 66-70, 71-75, 76-80, 81-85, 86-90, 91-100, 100+ Age categories in GLAD, EDGI and NBR have been created to reflect this
Frequencies
dem.raw.id$age_category
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
------------ ------- --------- -------------- --------- --------------
16-18 25 0.14 0.14 0.14 0.14
19-25 531 3.04 3.19 3.04 3.19
26-35 1755 10.06 13.25 10.06 13.25
36-45 2162 12.40 25.65 12.39 25.64
46-55 3613 20.72 46.36 20.71 46.35
56-65 4931 28.27 74.64 28.26 74.61
66-70 2338 13.41 88.04 13.40 88.01
71-75 1576 9.04 97.08 9.03 97.04
76-80 410 2.35 99.43 2.35 99.39
81-85 78 0.45 99.88 0.45 99.84
86-90 16 0.09 99.97 0.09 99.93
91-100 2 0.01 99.98 0.01 99.94
100+ 3 0.02 100.00 0.02 99.96
<NA> 7 0.04 100.00
Total 17447 100.00 100.00 100.00 100.00Highest education (prepandemic, GLAD & EDGI)
Proceed along qualifications fields. If field is not blank, take that as highest qual. If field is blank, check next field. If all fields are blank, NA Assumes University degree > A level > NVQ > GCSE/O Level/CSE
Check highest education coding
Employment
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "subjectid"
[5] "employment.phd"
[6] "employment.masters_degree_or_equivalent"
[7] "employment.postgraduate_degree_or_equivalent"
[8] "employment.bachelors_degree_or_equivalent"
[9] "employment.a_levelsas_levels_or_equivalent"
[10] "employment.o_levelsgcses_or_equivalent"
[11] "employment.cses_or_equivalent"
[12] "employment.nvq_or_hnd_or_hnc_or_equivalent"
[13] "employment.other_professional_qualifications_e.g._nursing_teaching"
[14] "employment.other_professional_qualifications_e.g._nursing_teaching_text.txt"
[15] "employment.none_of_the_above"
[16] "employment.fulltime_employed"
[17] "employment.parttime_employed"
[18] "employment.unemployed"
[19] "employment.zerohours_contract"
[20] "employment.stayathome_parent_or_carer"
[21] "employment.selfemployed"
[22] "employment.contract_or_freelance_work"
[23] "employment.small_business_owner"
[24] "employment.receiving_state_income"
[25] "employment.retired"
[26] "employment.student_gcse_or_a_level"
[27] "employment.student_university"
[28] "employment.my_employment_status_has_not_changed"
[29] "employment.became_unemployed"
[30] "employment.reduction_in_hours"
[31] "employment.reduction_in_salary"
[32] "employment.benefits_increased"
[33] "employment.benefits_decreased"
[34] "employment.change_in_duties_or_responsibilities"
[35] "employment.became_employed"
[36] "employment.increased_hours"
[37] "employment.increased_salary"
[38] "employment.furloughed_or_paid_leave_government_funded"
[39] "employment.furloughed_or_paid_leave_company_funded"
[40] "employment.paid_leave_furloughed"
[41] "employment.taking_unpaid_leave"
[42] "employment.other"
[43] "employment.other_text.txt"
[44] "employment.no_impact"
[45] "employment.cancelled_exams"
[46] "employment.change_in_format_of_exams"
[47] "employment.automatic_pass"
[48] "employment.change_in_deadlines"
[49] "employment.change_in_lesson_delivery"
[50] "employment.past_performance_grade_decided"
[51] "employment.cancelled_classes"
[52] "employment.cannot_complete_degree"
[53] "employment.impact_on_studies_still_unknown"
[54] "employment.other.1"
[55] "employment.other_text.txt.1"
[56] "employment.complete_home_work"
[57] "employment.are_you_currently_working_from_home"
[58] "employment.attend_work_encouraged_work"
[59] "employment.government_work_key_workers"
[60] "employment.government_work_key_workers.txt"
[61] "employment.type_role"
[62] "employment.type_role.1"
[63] "employment.type_role.txt"
[64] "employment.does_your_job_include_caring_for_others"
[65] "employment.is_your_job_public_facing_"
[66] "employment.job_due_losing_risk"
[67] "employment.increased_due_job_pandemic" Select variables
RAMP
Read in data
Select variables
Highest education (baseline, GLAD, EDGI, NBR)
Proceed along qualifications fields. If field is not blank, take that as highest qual. If field is blank, check next field. If all fields are blank, NA Assumes University degree > A level > NVQ > GCSE/O Level/CSE
Frequencies
employment.raw.id$highest_education
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
---------------- ------- --------- -------------- --------- --------------
GCSE/CSE 2590 15.80 15.80 14.84 14.84
NVQ 1836 11.20 27.00 10.52 25.37
A-levels 3176 19.38 46.38 18.20 43.57
University 8788 53.62 100.00 50.37 93.94
<NA> 1057 6.06 100.00
Total 17447 100.00 100.00 100.00 100.00Highest education (baseline, RAMP)
Check highest education coding for RAMP
Key worker status
Frequencies
employment.raw.id$key_worker
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
------------------- ------- --------- -------------- --------- --------------
No key worker 11398 65.54 65.54 65.33 65.33
Key worker 5992 34.46 100.00 34.34 99.67
<NA> 57 0.33 100.00
Total 17447 100.00 100.00 100.00 100.00Columns to exclude from add_numeric
mhd
GLAD
EDGI
NBR
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "subjectid"
[5] "mhd.depression"
[6] "mhd.pregnancy_depression"
[7] "mhd.premenstrual_dysphoric_disorder_pmdd"
[8] "mhd.mania_hypomania_bipolar_or_manicdepression"
[9] "mhd.anxiety_nerves_or_generalised_anxiety_disorder"
[10] "mhd.social_anxiety_or_social_phobia"
[11] "mhd.specific_phobia_e.g._fear_of_flying"
[12] "mhd.agoraphobia"
[13] "mhd.panic_attacks"
[14] "mhd.panic_disorder"
[15] "mhd.posttraumatic_stress_disorder_ptsd"
[16] "mhd.obsessivecompulsive_disorder_ocd"
[17] "mhd.body_dysmorphic_disorder_bdd"
[18] "mhd.obsessive_compulsive_related_disorders"
[19] "mhd.none_of_the_above"
[20] "mhd.dont_know"
[21] "mhd.prefer_not_to_answer"
[22] "mhd.depression.1"
[23] "mhd.depression_during_or_after_pregnancy"
[24] "mhd.premenstrual_dysphoric_disorder"
[25] "mhd.mania_hypomania_bipolar_or_manicdepression.1"
[26] "mhd.social_anxiety_or_social_phobia.1"
[27] "mhd.specific_phobia"
[28] "mhd.agoraphobia.1"
[29] "mhd.panic_attacks.1"
[30] "mhd.panic_disorder.1"
[31] "mhd.posttraumatic_stress_disorder"
[32] "mhd.obsessivecompulsive_disorder"
[33] "mhd.body_dysmorphic_disorder"
[34] "mhd.other_obsessivecompulsive_related_disorders"
[35] "mhd.anxiety_nerves_or_generalised_anxiety_disorder.1"
[36] "mhd.depression.2"
[37] "mhd.depression_during_or_after_pregnancy.1"
[38] "mhd.premenstrual_dysphoric_disorder.1"
[39] "mhd.mania_hypomania_bipolar_or_manicdepression.2"
[40] "mhd.social_anxiety_or_social_phobia.2"
[41] "mhd.specific_phobia.1"
[42] "mhd.agoraphobia.2"
[43] "mhd.panic_attacks.2"
[44] "mhd.panic_disorder.2"
[45] "mhd.posttraumatic_stress_disorder.1"
[46] "mhd.obsessivecompulsive_disorder.1"
[47] "mhd.body_dysmorphic_disorder.1"
[48] "mhd.other_obsessivecompulsive_related_disorders.1"
[49] "mhd.anxiety_nerves_or_generalised_anxiety_disorder.2"
[50] "mhd.schizophrenia"
[51] "mhd.psychosis_type_psychotic_illness"
[52] "mhd.personality_disorder"
[53] "mhd.autism_spectrum_disorder_asd"
[54] "mhd.attention_deficit_hyperactivity_disorder"
[55] "mhd.other"
[56] "mhd.other_text.txt"
[57] "mhd.none_of_the_above.1"
[58] "mhd.dont_know.1"
[59] "mhd.prefer_not_to_answer.1"
[60] "mhd.schizophrenia.1"
[61] "mhd.psychosis_type_psychotic_illness.1"
[62] "mhd.autism_spectrum_disorder"
[63] "mhd.attention_deficit_hyperactivity_disorder.1"
[64] "mhd.other_qqid1175choicetextentryvalue21"
[65] "mhd.personality_disorder_diagnosed"
[66] "mhd.paranoid_personality_disorder"
[67] "mhd.schizotypal_personality_disorder"
[68] "mhd.antisocial_personality_disorder"
[69] "mhd.borderlineemotionally_unstable_personality_disorder"
[70] "mhd.histrionic_personality_disorder"
[71] "mhd.narcissistic_personality_disorder"
[72] "mhd.avoidantanxious_personality_disorder"
[73] "mhd.dependent_personality_disorder"
[74] "mhd.obsessivecompulsive_personality_disorder"
[75] "mhd.schizoid_personality_disorder"
[76] "mhd.suspected_eating_disorder_diagnosed"
[77] "mhd.received_treatment_eating_disorder"
[78] "mhd.anorexia_nervosa"
[79] "mhd.atypical_anorexia_nervosa"
[80] "mhd.bulimia_nervosa"
[81] "mhd.atypical_bulimia_nervosa"
[82] "mhd.bingeeating_disorder"
[83] "mhd.atypical_bingeeating_disorder"
[84] "mhd.purging_disorder"
[85] "mhd.nighteating_syndrome"
[86] "mhd.pica"
[87] "mhd.avoidantrestrictive_food_intake_disorder_arfid"
[88] "mhd.rumination_eating_disorder"
[89] "mhd.feeding_eating_disorder"
[90] "mhd.other_eating_disorder"
[91] "mhd.other_eating_disorder_text.txt"
[92] "mhd.none_of_the_above.2"
[93] "mhd.dont_know.2"
[94] "mhd.prefer_not_to_answer.2"
[95] "mhd.anorexia_nervosa.1"
[96] "mhd.atypical_anorexia_nervosa.1"
[97] "mhd.bulimia_nervosa.1"
[98] "mhd.atypical_bulimia_nervosa.1"
[99] "mhd.bingeeating_disorder.1"
[100] "mhd.atypical_bingeeating_disorder.1"
[101] "mhd.purging_disorder.1"
[102] "mhd.nighteating_syndrome.1"
[103] "mhd.pica.1"
[104] "mhd.avoidantrestrictive_food_intake_disorder"
[105] "mhd.rumination_eating_disorder.1"
[106] "mhd.other_eating_disorder.1"
[107] "mhd.other_specified_feeding_or_eating_disorder"
[108] "mhd.anorexia_nervosa.2"
[109] "mhd.atypical_anorexia_nervosa.2"
[110] "mhd.bulimia_nervosa.2"
[111] "mhd.atypical_bulimia_nervosa.2"
[112] "mhd.bingeeating_disorder.2"
[113] "mhd.atypical_bingeeating_disorder.2"
[114] "mhd.purging_disorder.2"
[115] "mhd.nighteating_syndrome.2"
[116] "mhd.pica.2"
[117] "mhd.avoidantrestrictive_food_intake_disorder.1"
[118] "mhd.rumination_eating_disorder.2"
[119] "mhd.other_eating_disorder.2"
[120] "mhd.other_specified_feeding_or_eating_disorder.1"
[121] "mhd.prevented_usual_activities_mental"
[122] "mhd.unusual_experiences_seek_receive" [1] 173RAMP
Grouping mental health disorders
#Disorder groupings - from COPING/RAMP analysis minutes 1. Depressive disorder group: major depression, antenatal/postnatal depression, premenstrual depression. The logic for this has been double checked for males - KT/MD. 2. Anxiety group: generalised anxiety, social anxiety, specific phobia, agoraphobia, panic_disorder, panic_attacks. 3. Agoraphobia and panic_disorder group: panic_disorder, agoraphobia, panic_attacks. 4. Eating disorders group: anorexianervosa, atypical anorexia nervosa, bulimia nervosa, overeating or bingeeating. 5. Obsessive complusive disorders: obsessive compulaive disorder, obsessive compulsive related disorders. 6. Psychotic disorders: schizophrenia, schizoaffective disorder, general psychosis or psychotic illness. 7. Personality disorders: cluster A, cluster B, cluster C 8. Control group: no diagnosed disorders.
Disorders of interest MDD and other depressive disorders Anxiety, nerves or generalised anxiety disorder Social anxiety Specific phobia Agoraphobia/panic disorder/panic attacks OCD (& OCD-related disorders e.g., skin picking?) PTSD Bipolar Eating disorders (Anorexia, BE-type EDs) Personality disorder: Clusters A, B, and C No-diagnosis group
Analysis plan of Disorders: KY and KP analysis plan 1. Basic: any anxiety or unipolar depressive disorder vs. those with no prior diagnosis 2. Specific: breakdown by type of prior anxiety (& related) disorder diagnosis 3. Breakdown by COVID or not (using COVIDENCE/Zoe algorithm)
Depressive disorders
Warning: Problem with `mutate()` input `depressive_disorders`.
ℹ NAs introduced by coercion
ℹ Input `depressive_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$depressive_disorders
Type: Factor
Freq % Valid % Total
---------------------------- ------- --------- ---------
No depressive disorder 13278 76.72 76.10
Depressive disorder 4028 23.28 23.09
<NA> 141 0.81
Total 17447 100.00 100.00Anxiety disorders
Warning: Problem with `mutate()` input `anxiety_disorders`.
ℹ NAs introduced by coercion
ℹ Input `anxiety_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$anxiety_disorders
Type: Factor
Freq % Valid % Total
------------------------- ------- --------- ---------
No anxiety disorder 14559 84.13 83.45
Anxiety disorder 2747 15.87 15.74
<NA> 141 0.81
Total 17447 100.00 100.00Agoraphobia and panic disorder group
Warning: Problem with `mutate()` input `agoraphobia_panic_disorder`.
ℹ NAs introduced by coercion
ℹ Input `agoraphobia_panic_disorder` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$agoraphobia_panic_disorder
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------------------------------- ------- --------- -------------- --------- --------------
No agoraphobia/panic disorder 16331 94.37 94.37 93.60 93.60
Agoraphobia/panic disorder 975 5.63 100.00 5.59 99.19
<NA> 141 0.81 100.00
Total 17447 100.00 100.00 100.00 100.00Depression and anxiety comorbidity
Warning: Problem with `mutate()` input `depression_and_anxiety`.
ℹ NAs introduced by coercion
ℹ Input `depression_and_anxiety` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$depression_and_anxiety
Type: Factor
Freq % Valid % Total
--------------------------------------- ------- --------- ---------
No depressive or anxiety disorder 12276 70.93 70.36
Depressive and anxiety disorder 1745 10.08 10.00
Only depressive disorder 2283 13.19 13.09
Only anxiety disorder 1002 5.79 5.74
<NA> 141 0.81
Total 17447 100.00 100.00Eating disorders
There is routing questionnaire if participants have been diagnosed with an eating disorder and afterwards they get asked the specific disorders. Therefore, mhd.suspected_eating_disorder_diagnosed_numeric needs to be recoded as 0 otherwise they would be NAs.
Warning: Problem with `mutate()` input `eating_disorders`.
ℹ NAs introduced by coercion
ℹ Input `eating_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$eating_disorders
Type: Factor
Freq % Valid % Total
------------------------ ------- --------- ---------
No eating disorder 17076 98.48 97.87
Eating disorder 263 1.52 1.51
<NA> 108 0.62
Total 17447 100.00 100.00For EDGI does not include other eating disorders, such as purging disorder, rumination disorder, ARFID, or Pica
Eating disorders with binge eating vs eating disorders without Caveat: Anorexia nervosa can have binge eating as well. Therefore, this would need an additional variable from the ED100K
Warning: Problem with `mutate()` input `restricting_vs_binge_eating_eating_disorders`.
ℹ NAs introduced by coercion
ℹ Input `restricting_vs_binge_eating_eating_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$restricting_vs_binge_eating_eating_disorders
Type: Factor
Freq % Valid % Total
--------------------------------------- ------- --------- ---------
No eating disorder 17076 98.48 97.87
Anorexia nervosa 139 0.80 0.80
Eating disorder with binge eating 124 0.72 0.71
<NA> 108 0.62
Total 17447 100.00 100.00Obsessive compulsive disorders
Warning: Problem with `mutate()` input `obsessive_compulsive_disorders`.
ℹ NAs introduced by coercion
ℹ Input `obsessive_compulsive_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$obsessive_compulsive_disorders
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
-------------------------------------- ------- --------- -------------- --------- --------------
No obsessive compulsive disorder 17069 98.63 98.63 97.83 97.83
Obsessive compulsive disorder 237 1.37 100.00 1.36 99.19
<NA> 141 0.81 100.00
Total 17447 100.00 100.00 100.00 100.00Psychotic disorders
“mhd.schizophrenia_numeric”
“mhd.schizoaffective_disorder_numeric”
“mhd.type_psychosis_psychotic_illness_numeric”
Warning: Problem with `mutate()` input `psychotic_disorders`.
ℹ NAs introduced by coercion
ℹ Input `psychotic_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$psychotic_disorders
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
--------------------------- ------- --------- -------------- --------- --------------
No psychotic disorder 17193 99.65 99.65 98.54 98.54
Psychotic disorder 61 0.35 100.00 0.35 98.89
<NA> 193 1.11 100.00
Total 17447 100.00 100.00 100.00 100.00Overlap between self-report schizophrenia and bipolar disorder +++CH: Check overlap between schizophrenia group and bipolar disorder ++KT: Only 63 with comorbid self-report bipolar disorder and schizophrenia. More likely to have shared symptoms, less likely to have confirmed diagnoses of both. Could be too severe to be in GLAD?
Warning: Problem with `mutate()` input `bipolar_and_schizophrenia`.
ℹ NAs introduced by coercion
ℹ Input `bipolar_and_schizophrenia` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$bipolar_and_schizophrenia
Type: Factor
Freq % Valid % Total
-------------------------------------- ------- --------- ---------
No psychotic or bipolar disorder 17060 99.09 97.78
Psychotic and bipolar disorder 15 0.09 0.09
Only psychotic disorder 46 0.27 0.26
Only bipolar disorder 95 0.55 0.54
<NA> 231 1.32
Total 17447 100.00 100.00Autism spectrum disorder
Frequencies
mhd.raw.id$autism_spectrum_disorder
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
--------------------------------- ------- --------- -------------- --------- --------------
No autism spectrum disorder 17188 99.62 99.62 98.52 98.52
Autism spectrum disorder 66 0.38 100.00 0.38 98.89
<NA> 193 1.11 100.00
Total 17447 100.00 100.00 100.00 100.00Personality disorders
++KT: For all cluster coding chunks - have added other clusters as == 0, so that they are not coerced into NAs. Cluster A 1. Paranoid 28 ( 1.0%) 2. Schizoid 15 ( 0.5%) 3. Schizotypal 14 ( 0.5%)
Warning: Problem with `mutate()` input `personality_cluster_a`.
ℹ NAs introduced by coercion
ℹ Input `personality_cluster_a` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$personality_cluster_a
Type: Factor
Freq % Valid % Total
--------------------------------------- ------- --------- ---------
No personality disorder cluster A 17236 99.97 98.79
Personality disorder cluster A 5 0.03 0.03
<NA> 206 1.18
Total 17447 100.00 100.00Cluster B 4. Antisocial 24 ( 0.8%) 5. Borderline 2553 (89.4%) 6. Histrionic 7 ( 0.2%) 7. Narcissistic 8 ( 0.3%)
Warning: Problem with `mutate()` input `personality_cluster_b`.
ℹ NAs introduced by coercion
ℹ Input `personality_cluster_b` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$personality_cluster_b
Type: Factor
Freq % Valid % Total
--------------------------------------- ------- --------- ---------
No personality disorder cluster B 17159 99.52 98.35
Personality disorder cluster B 82 0.48 0.47
<NA> 206 1.18
Total 17447 100.00 100.00Cluster C 8. Avoidant/anxious 133 ( 4.7%) 9. Dependent 29 ( 1.0%) 10. Obsessive-compulsive
Warning: Problem with `mutate()` input `personality_cluster_c`.
ℹ NAs introduced by coercion
ℹ Input `personality_cluster_c` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$personality_cluster_c
Type: Factor
Freq % Valid % Total
--------------------------------------- ------- --------- ---------
No personality disorder cluster C 17233 99.95 98.77
Personality disorder cluster C 8 0.05 0.05
<NA> 206 1.18
Total 17447 100.00 100.00Controls
These individuals have no self report diagnosis of any kind that we measure.
Warning: Problem with `mutate()` input `control`.
ℹ NAs introduced by coercion
ℹ Input `control` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$control
Type: Factor
Freq % Valid % Total
---------------- ------- --------- ---------
No control 5637 32.60 32.31
Control 11652 67.40 66.79
<NA> 158 0.91
Total 17447 100.00 100.00Inspect the participants that do not qualify as double “None of these”
Total disorder count
Frequencies
mhd.raw.id$disorders_total_count
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 12011 69.82 68.84
1 3180 18.49 18.23
2 1522 8.85 8.72
3 349 2.03 2.00
4 91 0.53 0.52
5 30 0.17 0.17
6 18 0.10 0.10
7 2 0.01 0.01
<NA> 244 1.40
Total 17447 100.00 100.00Comorbidity count
Frequencies
mhd.raw.id$comorbidity_total_count_numeric
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 3180 61.25 18.23
1 1522 29.31 8.72
2 349 6.72 2.00
3 91 1.75 0.52
4 30 0.58 0.17
5 18 0.35 0.10
6 2 0.04 0.01
<NA> 12255 70.24
Total 17447 100.00 100.00Warning: Problem with `mutate()` input `comorbidity_total_count_factor`.
ℹ NAs introduced by coercion
ℹ Input `comorbidity_total_count_factor` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$comorbidity_total_count_factor
Type: Factor
Freq % Valid % Total
-------------------------- ------- --------- ---------
No comorbidity 3180 61.25 18.23
1 comorbid disoder 1522 29.31 8.72
2 comorbid disoders 349 6.72 2.00
3+ comorbid disoders 141 2.72 0.81
<NA> 12255 70.24
Total 17447 100.00 100.00Inspection
Create new dataframe with the derived categories
Prepandemic
GAD (prepan)
Calculate sum score for GAD-7 Max should be 21.
*Note that scores with missingness will be changed to NA later in the script
missingness (NAs per person)
prepandemic
PCL (prepan)
Calculate sum score for PCL-6
*Note that scores with missingness will be changed to NA later in the script
Missigness
prepandemic
PHQ (prepan)
Calculate sum score for PHQ-9
*Note that scores with missingness will be changed to NA later in the script
PHQ missingness (NAs per person)
prepandemic
all times
+++CH: THINK ABOUT THIS!!!
8 items
OCIR (prepan)
Calculate sum score for OCI-R
*Note that scores with missingness will be changed to NA later in the script
prepandemic
COPING GAD-7
GLAD
EDGI
NBR
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "subjectid"
[5] "gad.problems_made_care_difficult"
[6] "gad.pandemic_felt_feelings"
[7] "gad.feeling_nervous_anxious_or_on_edge"
[8] "gad.control_worrying_stop"
[9] "gad.worrying_too_much_about_different_things"
[10] "gad.trouble_relaxing"
[11] "gad.sit_restless_hard"
[12] "gad.becoming_easily_annoyed_or_irritable"
[13] "gad.feeling_afraid_awful_happen"
[14] "gad.feeling_nervous_anxious_or_on_edge.1"
[15] "gad.control_worrying_stop.1"
[16] "gad.worrying_too_much_about_different_things.1"
[17] "gad.trouble_relaxing.1"
[18] "gad.sit_restless_hard.1"
[19] "gad.becoming_easily_annoyed_or_irritable.1"
[20] "gad.feeling_afraid_awful_happen.1" [1] 173RAMP
Sum scores
Calculate sum score for GAD-7 retrospective
Warning in scoreItems(keys = gad.items_key_retro, items =
coping.gad.raw.id[gad.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?Descriptive Statistics
coping.gad.raw.id$gad.sum_score_retro_raw
N: 17447
gad.sum_score_retro_raw
--------------- -------------------------
Mean 1.17
Std.Dev 2.57
Min 0.00
Median 0.00
Max 21.00
N.Valid 17447.00
Pct.Valid 100.00Calculate sum score for GAD-7 baseline
Warning in scoreItems(keys = gad.items_key_base, items =
coping.gad.raw.id[gad.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?Descriptive Statistics
coping.gad.raw.id$gad.sum_score_base_raw
N: 17447
gad.sum_score_base_raw
--------------- ------------------------
Mean 2.62
Std.Dev 3.88
Min 0.00
Median 1.00
Max 21.00
N.Valid 17447.00
Pct.Valid 100.00Missingness
baseline
Frequencies
coping.gad.raw.id$na_per_person_gad_base
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 16666 95.52 95.52
1 8 0.05 0.05
2 7 0.04 0.04
3 2 0.01 0.01
4 1 0.01 0.01
5 1 0.01 0.01
6 4 0.02 0.02
7 758 4.34 4.34
<NA> 0 0.00
Total 17447 100.00 100.00Frequencies
coping.gad.raw.id$na_per_person_gad_retro
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 6991 40.07 40.07
1 12 0.07 0.07
2 4 0.02 0.02
3 1 0.01 0.01
5 1 0.01 0.01
6 3 0.02 0.02
7 10435 59.81 59.81
<NA> 0 0.00
Total 17447 100.00 100.00Descriptive Statistics
coping.gad.raw.id$gad.sum_score_base_raw
N: 17447
gad.sum_score_base_raw
--------------- ------------------------
Mean 2.62
Std.Dev 3.88
Min 0.00
Median 1.00
Max 21.00
N.Valid 17447.00
Pct.Valid 100.00Descriptive Statistics
coping.gad.raw.id$gad.sum_score_base
N: 17447
gad.sum_score_base
--------------- --------------------
Mean 2.74
Std.Dev 3.92
Min 0.00
Median 1.00
Max 21.00
N.Valid 16666.00
Pct.Valid 95.52Descriptive Statistics
coping.gad.raw.id$gad.sum_score_retro_raw
N: 17447
gad.sum_score_retro_raw
--------------- -------------------------
Mean 1.17
Std.Dev 2.57
Min 0.00
Median 0.00
Max 21.00
N.Valid 17447.00
Pct.Valid 100.00Descriptive Statistics
coping.gad.raw.id$gad.sum_score_retro
N: 17447
gad.sum_score_retro
--------------- ---------------------
Mean 2.90
Std.Dev 3.38
Min 0.00
Median 2.00
Max 21.00
N.Valid 6991.00
Pct.Valid 40.07Inspection
COPING: PCL-6
GLAD
Note: Retro for the PCL does not mean retrospective
EDGI
Note: Retro for the PCL does not mean retrospective
NBR
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "subjectid"
[5] "pcl.stressful_experience_repeated_images"
[6] "pcl.stressful_experience_upset_reminded"
[7] "pcl.avoiding_activities_stressful_experience"
[8] "pcl.cut_people_feeling_distant"
[9] "pcl.feeling_irritable_or_having_angry_outbursts"
[10] "pcl.difficulty_concentrating"
[11] "pcl.stressful_experience_repeated_images.1"
[12] "pcl.stressful_experience_upset_reminded.1"
[13] "pcl.avoiding_activities_stressful_experience.1"
[14] "pcl.cut_people_feeling_distant.1"
[15] "pcl.feeling_irritable_or_having_angry_outbursts.1"
[16] "pcl.difficulty_concentrating.1" Note: Retro for the PCL does not mean retrospective
[1] 173RAMP
Note: Retro for the PCL does not mean retrospective
Recode RAMP PCL retro scores
[1] "Sample"
[2] "ID"
[3] "pcl.stressful_experience_repeated_images_base"
[4] "pcl.stressful_experience_upset_reminded_base"
[5] "pcl.stressful_situation_avoiding_activities_base"
[6] "pcl.cut_people_feeling_distant_base"
[7] "pcl.feeling_irritable_or_having_angry_outbursts_base"
[8] "pcl.difficulty_concentrating_base"
[9] "pcl.stressful_experience_repeated_images_retro"
[10] "pcl.stressful_experience_upset_reminded_retro"
[11] "pcl.stressful_situation_avoiding_activities_retro"
[12] "pcl.cut_people_feeling_distant_retro"
[13] "pcl.feeling_irritable_or_having_angry_outbursts_retro"
[14] "pcl.difficulty_concentrating_retro"
[15] "pcl.stressful_experience_repeated_images_base_numeric"
[16] "pcl.stressful_experience_upset_reminded_base_numeric"
[17] "pcl.stressful_situation_avoiding_activities_base_numeric"
[18] "pcl.cut_people_feeling_distant_base_numeric"
[19] "pcl.feeling_irritable_or_having_angry_outbursts_base_numeric"
[20] "pcl.difficulty_concentrating_base_numeric"
[21] "pcl.stressful_experience_repeated_images_retro_numeric"
[22] "pcl.stressful_experience_upset_reminded_retro_numeric"
[23] "pcl.stressful_situation_avoiding_activities_retro_numeric"
[24] "pcl.cut_people_feeling_distant_retro_numeric"
[25] "pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric"
[26] "pcl.difficulty_concentrating_retro_numeric" Sum scores
Calculate sum score for PCL-6 retro
Warning in scoreItems(keys = pcl.items_key_retro, items =
coping.pcl.raw.id[pcl.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_retro_raw
N: 17447
pcl.sum_score_retro_raw
--------------- -------------------------
Mean 0.69
Std.Dev 1.15
Min 0.00
Median 0.00
Max 6.00
N.Valid 17447.00
Pct.Valid 100.00Calculate sum score for PCL-6 base The sum scores here will not be accurate if we are using complete cases. Only use sum scores here for complete cases, otherwise the minimum will be 0 where it should be 6.
Warning in scoreItems(keys = pcl.items_key_base, items =
coping.pcl.raw.id[pcl.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_base_raw
N: 17447
pcl.sum_score_base_raw
--------------- ------------------------
Mean 8.12
Std.Dev 4.16
Min 0.00
Median 7.00
Max 30.00
N.Valid 17447.00
Pct.Valid 100.00Missingness
PCL missingness (NAs per person)
baseline
Frequencies
coping.pcl.raw.id$na_per_person_pcl_base
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 16133 92.47 92.47
1 104 0.60 0.60
2 13 0.07 0.07
3 6 0.03 0.03
4 7 0.04 0.04
5 9 0.05 0.05
6 1175 6.73 6.73
<NA> 0 0.00
Total 17447 100.00 100.00retrospective
Frequencies
coping.pcl.raw.id$na_per_person_pcl_retro
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 909 5.21 5.21
1 1053 6.04 6.04
2 1259 7.22 7.22
3 1998 11.45 11.45
4 2449 14.04 14.04
5 2805 16.08 16.08
6 6974 39.97 39.97
<NA> 0 0.00
Total 17447 100.00 100.00Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_base_raw
N: 17447
pcl.sum_score_base_raw
--------------- ------------------------
Mean 8.12
Std.Dev 4.16
Min 0.00
Median 7.00
Max 30.00
N.Valid 17447.00
Pct.Valid 100.00Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_base
N: 17447
pcl.sum_score_base
--------------- --------------------
Mean 8.72
Std.Dev 3.66
Min 6.00
Median 7.00
Max 30.00
N.Valid 16133.00
Pct.Valid 92.47Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_retro_raw
N: 17447
pcl.sum_score_retro_raw
--------------- -------------------------
Mean 0.69
Std.Dev 1.15
Min 0.00
Median 0.00
Max 6.00
N.Valid 17447.00
Pct.Valid 100.00Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_retro
N: 17447
pcl.sum_score_retro
--------------- ---------------------
Mean 2.10
Std.Dev 2.02
Min 0.00
Median 2.00
Max 6.00
N.Valid 909.00
Pct.Valid 5.21Inspection
COPING: PHQ
GLAD
Will need to double check these namings once we have the new cleaned data – KT.
EDGI
NBR
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "subjectid"
[5] "phq.problems_made_care_difficult"
[6] "phq.pandemic_felt_feelings"
[7] "phq.little_interest_or_pleasure_in_doing_things"
[8] "phq.feeling_down_depressed_or_hopeless"
[9] "phq.staying_asleep_sleeping_trouble"
[10] "phq.feeling_tired_or_having_little_energy"
[11] "phq.poor_appetite_or_overeating"
[12] "phq.family_feeling_bad_failure"
[13] "phq.trouble_concentrating_newspaper_reading"
[14] "phq.moving_fidgety_opposite_slowly"
[15] "phq.dead_hurting_thoughts"
[16] "phq.little_interest_or_pleasure_in_doing_things.1"
[17] "phq.feeling_down_depressed_or_hopeless.1"
[18] "phq.staying_asleep_sleeping_trouble.1"
[19] "phq.feeling_tired_or_having_little_energy.1"
[20] "phq.poor_appetite_or_overeating.1"
[21] "phq.family_feeling_bad_failure.1"
[22] "phq.trouble_concentrating_newspaper_reading.1"
[23] "phq.moving_fidgety_opposite_slowly.1"
[24] "phq.dead_hurting_thoughts.1" Will need to double check these namings once we have the new cleaned data – KT.
[1] 173RAMP
Will need to double check these namings once we have the new cleaned data – KT.
Sum scores
Calculate sum score for PHQ-9 retro
Warning in scoreItems(keys = phq.items_key_retro, items =
coping.phq.raw.id[phq.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?Descriptive Statistics
coping.phq.raw.id$phq.sum_score_retro_raw
N: 17447
phq.sum_score_retro_raw
--------------- -------------------------
Mean 1.63
Std.Dev 3.22
Min 0.00
Median 0.00
Max 27.00
N.Valid 17447.00
Pct.Valid 100.00Calculate sum score for PHQ-9 base
Warning in scoreItems(keys = phq.items_key_base, items =
coping.phq.raw.id[phq.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?Descriptive Statistics
coping.phq.raw.id$phq.sum_score_base_raw
N: 17447
phq.sum_score_base_raw
--------------- ------------------------
Mean 3.73
Std.Dev 4.47
Min 0.00
Median 2.00
Max 27.00
N.Valid 17447.00
Pct.Valid 100.00Missingness
retrospective
Frequencies
coping.phq.raw.id$na_per_person_phq_retro
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 7859 45.04 45.04
1 19 0.11 0.11
2 4 0.02 0.02
3 1 0.01 0.01
5 2 0.01 0.01
6 3 0.02 0.02
7 5 0.03 0.03
8 3 0.02 0.02
9 9551 54.74 54.74
<NA> 0 0.00
Total 17447 100.00 100.00Frequencies
coping.phq.raw.id$phq.missing_only_suicide_item_retro
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 17444 99.98 99.98
1 3 0.02 0.02
<NA> 0 0.00
Total 17447 100.00 100.00baseline
Frequencies
coping.phq.raw.id$na_per_person_phq_base
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 17078 97.89 97.89
1 22 0.13 0.13
2 11 0.06 0.06
3 5 0.03 0.03
4 4 0.02 0.02
5 2 0.01 0.01
6 9 0.05 0.05
7 12 0.07 0.07
8 15 0.09 0.09
9 289 1.66 1.66
<NA> 0 0.00
Total 17447 100.00 100.00We need to identify those who have all items APART from the suicide ideation item - to still include these individuals.
Frequencies
coping.phq.raw.id$phq.missing_only_suicide_item_base
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 17441 99.97 99.97
1 6 0.03 0.03
<NA> 0 0.00
Total 17447 100.00 100.00Descriptive Statistics
coping.phq.raw.id$phq.sum_score_base_raw
N: 17447
phq.sum_score_base_raw
--------------- ------------------------
Mean 3.73
Std.Dev 4.47
Min 0.00
Median 2.00
Max 27.00
N.Valid 17447.00
Pct.Valid 100.00Descriptive Statistics
coping.phq.raw.id$phq.sum_score_base
N: 17447
phq.sum_score_base
--------------- --------------------
Mean 3.79
Std.Dev 4.49
Min 0.00
Median 2.00
Max 27.00
N.Valid 17078.00
Pct.Valid 97.898 items
Descriptive Statistics
coping.phq.raw.id$phq.sum_score_8items_base
N: 17447
phq.sum_score_8items_base
--------------- ---------------------------
Mean 3.73
Std.Dev 4.47
Min 0.00
Median 2.00
Max 27.00
N.Valid 17447.00
Pct.Valid 100.00Descriptive Statistics
coping.phq.raw.id$phq.sum_score_retro_raw
N: 17447
phq.sum_score_retro_raw
--------------- -------------------------
Mean 1.63
Std.Dev 3.22
Min 0.00
Median 0.00
Max 27.00
N.Valid 17447.00
Pct.Valid 100.00Descriptive Statistics
coping.phq.raw.id$phq.sum_score_retro
N: 17447
phq.sum_score_retro
--------------- ---------------------
Mean 3.60
Std.Dev 3.97
Min 0.00
Median 2.00
Max 27.00
N.Valid 7859.00
Pct.Valid 45.048 items
Descriptive Statistics
coping.phq.raw.id$phq.sum_score_8items_retro
N: 17447
phq.sum_score_8items_retro
--------------- ----------------------------
Mean 1.63
Std.Dev 3.22
Min 0.00
Median 0.00
Max 27.00
N.Valid 17447.00
Pct.Valid 100.00Inspection
COPING: OCI-R
GLAD
*Note that the COPING GLAD OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)
EDGI
*Note that the COPING EDGI OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)
NBR
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "recipientFirstName"
[5] "ocir.saved_things"
[6] "ocir.i_check_things_more_often_than_necessary."
[7] "ocir.arranged_properly_objects_upset"
[8] "ocir.feel_compelled_count_things"
[9] "ocir.strangers_touch_touched_object"
[10] "ocir.control_difficult_thoughts_find"
[11] "ocir.i_collect_things_i_dont_need."
[12] "ocir.i_repeatedly_check_doors_windows_drawers_etc."
[13] "ocir.arranged_things_change_upset"
[14] "ocir.repeat_numbers_feel"
[15] "ocir.feel_contaminated_clean_simply"
[16] "ocir.mind_upset_unpleasant_thoughts"
[17] "ocir.afraid_avoid_throwing_things"
[18] "ocir.water_taps_light_switches"
[19] "ocir.arranged_things"
[20] "ocir.bad_numbers_good_feel"
[21] "ocir.longer_hands_wash"
[22] "ocir.frequently_rid_difficulty_nasty"
[23] "ocir.felt_pandemic_feelings"
[24] "ocir.saved_things.1"
[25] "ocir.i_check_things_more_often_than_necessary..1"
[26] "ocir.arranged_properly_objects_upset.1"
[27] "ocir.feel_compelled_count_things.1"
[28] "ocir.strangers_touch_touched_object.1"
[29] "ocir.control_difficult_thoughts_find.1"
[30] "ocir.i_collect_things_i_dont_need..1"
[31] "ocir.i_repeatedly_check_doors_windows_drawers_etc..1"
[32] "ocir.arranged_things_change_upset.1"
[33] "ocir.repeat_numbers_feel.1"
[34] "ocir.feel_contaminated_clean_simply.1"
[35] "ocir.mind_upset_unpleasant_thoughts.1"
[36] "ocir.afraid_avoid_throwing_things.1"
[37] "ocir.water_taps_light_switches.1"
[38] "ocir.arranged_things.1"
[39] "ocir.bad_numbers_good_feel.1"
[40] "ocir.longer_hands_wash.1"
[41] "ocir.frequently_rid_difficulty_nasty.1" *Note that the COPING NBR OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)
++MD: One NBR ID is being converted to NA by the as.numeric(ID) line of code.
Warning: Problem with `mutate()` input `ID`.
ℹ NAs introduced by coercion
ℹ Input `ID` is `as.numeric(ID)`.Warning in mask$eval_all_mutate(dots[[i]]): NAs introduced by coercion[1] 318RAMP
*Note that the COPING RAMP OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)
Sum scores
Calculate sum score for OCI-R retro
Warning in scoreItems(keys = ocir.items_key_retro, items =
coping.ocir.raw.id[ocir.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_retro_raw
N: 13082
ocir.sum_score_retro_raw
--------------- --------------------------
Mean 1.37
Std.Dev 5.29
Min 0.00
Median 0.00
Max 70.00
N.Valid 13082.00
Pct.Valid 100.00Calculate sum score for OCI-R base
Warning in scoreItems(keys = ocir.items_key_base, items =
coping.ocir.raw.id[ocir.items_base], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_base_raw
N: 13082
ocir.sum_score_base_raw
--------------- -------------------------
Mean 0.53
Std.Dev 3.16
Min 0.00
Median 0.00
Max 70.00
N.Valid 13082.00
Pct.Valid 100.00Missingness
retrospective
Frequencies
coping.ocir.raw.id$na_per_person_ocir_retro
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 1314 10.04 10.04
1 4 0.03 0.03
2 1 0.01 0.01
17 1 0.01 0.01
18 11762 89.91 89.91
<NA> 0 0.00
Total 13082 100.00 100.00baseline
Frequencies
coping.ocir.raw.id$na_per_person_ocir_base
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 687 5.25 5.25
1 1 0.01 0.01
18 12394 94.74 94.74
<NA> 0 0.00
Total 13082 100.00 100.00Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_base_raw
N: 13082
ocir.sum_score_base_raw
--------------- -------------------------
Mean 0.53
Std.Dev 3.16
Min 0.00
Median 0.00
Max 70.00
N.Valid 13082.00
Pct.Valid 100.00Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_base
N: 13082
ocir.sum_score_base
--------------- ---------------------
Mean 10.11
Std.Dev 9.67
Min 0.00
Median 8.00
Max 70.00
N.Valid 687.00
Pct.Valid 5.25Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_retro_raw
N: 13082
ocir.sum_score_retro_raw
--------------- --------------------------
Mean 1.37
Std.Dev 5.29
Min 0.00
Median 0.00
Max 70.00
N.Valid 13082.00
Pct.Valid 100.00Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_retro
N: 13082
ocir.sum_score_retro
--------------- ----------------------
Mean 13.57
Std.Dev 10.59
Min 0.00
Median 11.00
Max 70.00
N.Valid 1314.00
Pct.Valid 10.04Inspection
Neurological symptoms
ALS (alsfrs)
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "subjectid"
[5] "alsfrs.limb_weakness_noticed_past"
[6] "alsfrs.normal"
[7] "alsfrs.slow_or_sloppy_all_words_are_legible"
[8] "alsfrs.not_all_words_are_legible"
[9] "alsfrs.able_to_grip_pen"
[10] "alsfrs.unable_to_grip_pen"
[11] "alsfrs.have_you_noticed_any_difficulty_walking"
[12] "alsfrs.do_you_have_any_difficulty_climbing_stairs"Select variables
[1] 170RAMP
Read in data
Select variables
Epsworth sleep scale (ess)
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "subjectid"
[5] "ess.felt_excessively_sleepy_past"
[6] "ess.sitting_and_reading"
[7] "ess.watching_tv"
[8] "ess.sitting_inactive_in_a_public_place"
[9] "ess.break_passenger_car_hour"
[10] "ess.afternoon_rest_circumstances_lying"
[11] "ess.sitting_and_talking_to_someone"
[12] "ess.sitting_quietly_after_a_lunch_without_alcohol"
[13] "ess.car_minutes_stopped_traffic"
[14] "ess.insomnia"
[15] "ess.narcolepsy"
[16] "ess.rem_sleep_behaviour_disorder"
[17] "ess.restless_legs_syndrome"
[18] "ess.sleep_apnea"
[19] "ess.sleep_terrors"
[20] "ess.sleepwalking"
[21] "ess.other"
[22] "ess.other_text.txt"
[23] "ess.none" Select variables
[1] 170RAMP
Read in data
Select variables
Migraines (midas)
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
[1] "externalDataReference" "startDate"
[3] "endDate" "subjectid"
[5] "midas.headaches_suffered_past_month" "midas.past_month_days"
[7] "midas.past_month_days.1" "midas.past_month_days.2"
[9] "midas.past_month_days.3" "midas.past_month_days.4" Select variables
[1] 170RAMP
Read in data
Select variables
Loss of taste/smell (nmss)
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
[1] "externalDataReference" "startDate"
[3] "endDate" "subjectid"
[5] "nmss.ability_taste_food_smell" "nmss.severe_taste_smell_loss" Select variables
[1] 170RAMP
Read in data
Select variables
Non-motor symptoms (nmsw)
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "subjectid"
[5] "nmsw.drink_problems_choking_difficulty"
[6] "nmsw.regularly_night_pass_urine"
[7] "nmsw.sex_difficult_finding"
[8] "nmsw.weak_standing_feeling_light"
[9] "nmsw.acting_moving_sleep_talking"
[10] "nmsw.double_vision" Select variables
[1] 170RAMP
Read in data
Select variables
Tinnitus
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
[1] "externalDataReference" "startDate"
[3] "endDate" "subjectid"
[5] "tinnitus.ears_noises_minutes_head" "tinnitus.ears_noises_minutes_head.1"
[7] "tinnitus.noises_worry_worst_upset" Select variables
[1] 170RAMP
Read in data
Select variables
Join tibbles together
edgi data frame list
glad data frame list
Removing all prepandemic dataframes from NBR/RAMP (prepandemic measures don’t exist for these cohorts)
| Name | dat.raw |
| Number of rows | 17447 |
| Number of columns | 400 |
| _______________________ | |
| Column type frequency: | |
| character | 5 |
| Date | 1 |
| factor | 182 |
| numeric | 211 |
| POSIXct | 1 |
| ________________________ | |
| Group variables | None |
Variable type: character
| skim_variable | n_missing | complete_rate | min | max | empty | n_unique | whitespace |
|---|---|---|---|---|---|---|---|
| Sample | 0 | 1.00 | 6 | 6 | 0 | 1 | 0 |
| Cohort | 119 | 0.99 | 3 | 8 | 0 | 7 | 0 |
| Ethnicity.unc | 3228 | 0.81 | 1 | 1 | 0 | 18 | 0 |
| Cohort_numeric | 119 | 0.99 | 3 | 8 | 0 | 7 | 0 |
| Ethnicity.unc_numeric | 3228 | 0.81 | 1 | 1 | 0 | 18 | 0 |
Variable type: Date
| skim_variable | n_missing | complete_rate | min | max | median | n_unique |
|---|---|---|---|---|---|---|
| Birthdate | 7 | 1 | 1909-09-12 | 2004-06-11 | 1963-06-19 | 11275 |
Variable type: factor
| skim_variable | n_missing | complete_rate | ordered | n_unique | top_counts |
|---|---|---|---|---|---|
| Birthyear_unc | 0 | 1.00 | FALSE | 80 | Pro: 547, Pro: 537, Pro: 535, Pro: 519 |
| Birthmonth | 0 | 1.00 | FALSE | 12 | Pro: 1569, Pro: 1533, Pro: 1499, Pro: 1473 |
| Birthday | 0 | 1.00 | FALSE | 31 | Pro: 636, Pro: 609, Pro: 608, Pro: 606 |
| Gender_unc | 23 | 1.00 | FALSE | 4 | Fem: 9951, Mal: 7418, Non: 38, Pre: 17 |
| Sex | 0 | 1.00 | FALSE | 2 | Fem: 9993, Mal: 7454 |
| Ethnicity_full | 3378 | 0.81 | FALSE | 17 | Whi: 12875, Whi: 599, Whi: 182, Asi: 89 |
| Ethnicity_unc | 3378 | 0.81 | FALSE | 4 | Whi: 13669, Asi: 184, Mix: 160, Bla: 56 |
| Gender | 23 | 1.00 | FALSE | 4 | Fem: 9951, Mal: 7418, Non: 38, Pre: 17 |
| Ethnicity | 3378 | 0.81 | FALSE | 4 | Whi: 13669, Asi: 184, Mix: 160, Bla: 56 |
| age_category | 7 | 1.00 | FALSE | 13 | 56-: 4931, 46-: 3613, 66-: 2338, 36-: 2162 |
| employment.phd | 13 | 1.00 | FALSE | 2 | Not: 16773, PhD: 661 |
| employment.masters_degree_or_equivalent | 13 | 1.00 | FALSE | 2 | Not: 14922, Mas: 2512 |
| employment.postgraduate_degree_or_equivalent | 13 | 1.00 | FALSE | 2 | Not: 15476, Pos: 1958 |
| employment.bachelors_degree_or_equivalent | 13 | 1.00 | FALSE | 2 | Not: 10175, Bac: 7259 |
| employment.a_levelsas_levels_or_equivalent | 13 | 1.00 | FALSE | 2 | A l: 9074, Not: 8360 |
| employment.o_levelsgcses_or_equivalent | 13 | 1.00 | FALSE | 2 | O l: 11777, Not: 5657 |
| employment.cses_or_equivalent | 13 | 1.00 | FALSE | 2 | Not: 14239, CSE: 3195 |
| employment.nvq_or_hnd_or_hnc_or_equivalent | 13 | 1.00 | FALSE | 2 | Not: 13300, NVQ: 4134 |
| employment.government_work_key_workers | 6946 | 0.60 | FALSE | 11 | Non: 4509, Hea: 1833, Edu: 1054, Oth: 948 |
| employment.unemployed | 32 | 1.00 | FALSE | 2 | Not: 16997, Une: 418 |
| employment.zerohours_contract | 32 | 1.00 | FALSE | 2 | Not: 17129, Zer: 286 |
| employment.stayathome_parent_or_carer | 32 | 1.00 | FALSE | 2 | Not: 16993, Sta: 422 |
| employment.retired | 32 | 1.00 | FALSE | 2 | Not: 11217, Ret: 6198 |
| employment.student_gcse_or_a_level | 32 | 1.00 | FALSE | 2 | Not: 17386, Stu: 29 |
| employment.student_university | 32 | 1.00 | FALSE | 2 | Not: 17064, Stu: 351 |
| employment.became_unemployed | 5905 | 0.66 | FALSE | 2 | Not: 11190, Bec: 352 |
| employment.furloughed_or_paid_leave_government_funded | 5905 | 0.66 | FALSE | 2 | Not: 10389, Fur: 1153 |
| employment.furloughed_or_paid_leave_company_funded | 5905 | 0.66 | FALSE | 2 | Not: 11339, Fur: 203 |
| employment.paid_leave_furloughed | 5905 | 0.66 | FALSE | 2 | Not: 11054, Fur: 488 |
| highest_education | 1057 | 0.94 | FALSE | 4 | Uni: 8788, A-l: 3176, GCS: 2590, NVQ: 1836 |
| key_worker | 57 | 1.00 | FALSE | 2 | No : 11398, Key: 5992 |
| anxiety_disorders | 141 | 0.99 | FALSE | 2 | No : 14559, Anx: 2747 |
| mhd.specific_phobia_e.g._phobia_of_flying | 141 | 0.99 | FALSE | 2 | Not: 17194, Spe: 112 |
| mhd.social_anxiety_or_social_phobia | 141 | 0.99 | FALSE | 2 | Not: 16966, Soc: 340 |
| agoraphobia_panic_disorder | 141 | 0.99 | FALSE | 2 | No : 16331, Ago: 975 |
| depressive_disorders | 141 | 0.99 | FALSE | 2 | No : 13278, Dep: 4028 |
| eating_disorders | 108 | 0.99 | FALSE | 2 | No : 17076, Eat: 263 |
| obsessive_compulsive_disorders | 141 | 0.99 | FALSE | 2 | No : 17069, Obs: 237 |
| psychotic_disorders | 193 | 0.99 | FALSE | 2 | No : 17193, Psy: 61 |
| mhd.mania_hypomania_bipolar_or_manicdepression | 141 | 0.99 | FALSE | 2 | Not: 17193, Man: 113 |
| mhd.posttraumatic_stress_disorder_ptsd | 141 | 0.99 | FALSE | 2 | Not: 16935, Pos: 371 |
| autism_spectrum_disorder | 193 | 0.99 | FALSE | 2 | No : 17188, Aut: 66 |
| mhd.attention_deficit_hyperactivity_disorder | 193 | 0.99 | FALSE | 2 | Not: 17201, Att: 53 |
| mhd.personality_disorder | 193 | 0.99 | FALSE | 2 | Not: 17146, Per: 108 |
| personality_cluster_a | 206 | 0.99 | FALSE | 2 | No : 17236, Per: 5 |
| personality_cluster_b | 206 | 0.99 | FALSE | 2 | No : 17159, Per: 82 |
| personality_cluster_c | 206 | 0.99 | FALSE | 2 | No : 17233, Per: 8 |
| depression_and_anxiety | 141 | 0.99 | FALSE | 4 | No : 12276, Onl: 2283, Dep: 1745, Onl: 1002 |
| restricting_vs_binge_eating_eating_disorders | 108 | 0.99 | FALSE | 3 | No : 17076, Ano: 139, Eat: 124 |
| bipolar_and_schizophrenia | 231 | 0.99 | FALSE | 4 | No : 17060, Onl: 95, Onl: 46, Psy: 15 |
| control | 158 | 0.99 | FALSE | 2 | Con: 11652, No : 5637 |
| comorbidity_total_count_factor | 12255 | 0.30 | FALSE | 4 | No : 3180, 1 c: 1522, 2 c: 349, 3+ : 141 |
| mhd.none_of_the_above | 141 | 0.99 | FALSE | 2 | Non: 11853, Not: 5453 |
| mhd.none_of_the_above.1 | 193 | 0.99 | FALSE | 2 | Non: 16774, Not: 480 |
| gad.problems_made_difficult_care | 7647 | 0.56 | FALSE | 4 | Not: 5705, Som: 3675, Ver: 289, Ext: 131 |
| gad.pandemic_felt_feelings | 784 | 0.96 | FALSE | 5 | No : 9623, A l: 5131, Muc: 1313, A l: 432 |
| gad.feeling_nervous_anxious_or_on_edge_retro | 10446 | 0.40 | FALSE | 4 | Not: 3847, Sev: 2718, Mor: 301, Nea: 135 |
| gad.control_worrying_stop_retro | 10444 | 0.40 | FALSE | 4 | Not: 4730, Sev: 1880, Mor: 278, Nea: 115 |
| gad.worrying_too_much_about_different_things_retro | 10442 | 0.40 | FALSE | 4 | Not: 3778, Sev: 2760, Mor: 322, Nea: 145 |
| gad.trouble_relaxing_retro | 10439 | 0.40 | FALSE | 4 | Not: 4486, Sev: 2082, Mor: 292, Nea: 148 |
| gad.sit_restless_hard_retro | 10442 | 0.40 | FALSE | 4 | Not: 5880, Sev: 925, Mor: 146, Nea: 54 |
| gad.becoming_easily_annoyed_or_irritable_retro | 10439 | 0.40 | FALSE | 4 | Not: 4039, Sev: 2620, Mor: 235, Nea: 114 |
| gad.awful_feeling_afraid_happen_retro | 10439 | 0.40 | FALSE | 4 | Not: 5366, Sev: 1324, Mor: 204, Nea: 114 |
| gad.feeling_nervous_anxious_or_on_edge_base | 765 | 0.96 | FALSE | 4 | Not: 10368, Sev: 4906, Mor: 837, Nea: 571 |
| gad.control_worrying_stop_base | 769 | 0.96 | FALSE | 4 | Not: 12629, Sev: 2938, Mor: 647, Nea: 464 |
| gad.worrying_too_much_about_different_things_base | 768 | 0.96 | FALSE | 4 | Not: 11264, Sev: 4126, Mor: 769, Nea: 520 |
| gad.trouble_relaxing_base | 764 | 0.96 | FALSE | 4 | Not: 11027, Sev: 4200, Mor: 845, Nea: 611 |
| gad.sit_restless_hard_base | 765 | 0.96 | FALSE | 4 | Not: 13960, Sev: 2040, Mor: 443, Nea: 239 |
| gad.becoming_easily_annoyed_or_irritable_base | 771 | 0.96 | FALSE | 4 | Not: 10658, Sev: 4879, Mor: 736, Nea: 403 |
| gad.awful_feeling_afraid_happen_base | 765 | 0.96 | FALSE | 4 | Not: 12534, Sev: 3119, Mor: 610, Nea: 419 |
| pcl.stressful_experience_repeated_images_base | 1194 | 0.93 | FALSE | 5 | Not: 12240, A l: 2783, Mod: 662, Qui: 442 |
| pcl.stressful_experience_upset_reminded_base | 1204 | 0.93 | FALSE | 5 | Not: 11148, A l: 3643, Mod: 790, Qui: 502 |
| pcl.stressful_situation_avoiding_activities_base | 1212 | 0.93 | FALSE | 5 | Not: 14023, A l: 1388, Mod: 460, Qui: 255 |
| pcl.cut_people_feeling_distant_base | 1209 | 0.93 | FALSE | 5 | Not: 9406, A l: 4026, Mod: 1349, Qui: 1062 |
| pcl.feeling_irritable_or_having_angry_outbursts_base | 1222 | 0.93 | FALSE | 5 | Not: 10915, A l: 4035, Mod: 798, Qui: 392 |
| pcl.difficulty_concentrating_base | 1230 | 0.93 | FALSE | 5 | Not: 10201, A l: 4273, Mod: 964, Qui: 571 |
| pcl.stressful_experience_repeated_images_retro | 13444 | 0.23 | FALSE | 2 | No: 3468, Yes: 535 |
| pcl.stressful_experience_upset_reminded_retro | 12358 | 0.29 | FALSE | 2 | No: 4217, Yes: 872 |
| pcl.stressful_situation_avoiding_activities_retro | 15223 | 0.13 | FALSE | 2 | No: 1858, Yes: 366 |
| pcl.cut_people_feeling_distant_retro | 10619 | 0.39 | FALSE | 2 | Yes: 4739, No: 2089 |
| pcl.feeling_irritable_or_having_angry_outbursts_retro | 12145 | 0.30 | FALSE | 2 | No: 2699, Yes: 2603 |
| pcl.difficulty_concentrating_retro | 11441 | 0.34 | FALSE | 2 | No: 3043, Yes: 2963 |
| phq.problems_made_difficult_care | 4792 | 0.73 | FALSE | 4 | Not: 7932, Som: 4176, Ver: 401, Ext: 146 |
| phq.pandemic_felt_feelings | 388 | 0.98 | FALSE | 5 | No : 9135, A l: 5862, Muc: 1406, A l: 470 |
| phq.little_interest_or_pleasure_in_doing_things_retro | 9564 | 0.45 | FALSE | 4 | Not: 5479, Sev: 2035, Mor: 264, Nea: 105 |
| phq.feeling_down_depressed_or_hopeless_retro | 9565 | 0.45 | FALSE | 4 | Not: 4712, Sev: 2764, Mor: 284, Nea: 122 |
| phq.staying_asleep_sleeping_trouble_retro | 9566 | 0.45 | FALSE | 4 | Not: 3691, Sev: 3213, Mor: 616, Nea: 361 |
| phq.feeling_tired_or_having_little_energy_retro | 9565 | 0.45 | FALSE | 4 | Sev: 3545, Not: 3370, Mor: 604, Nea: 363 |
| phq.poor_appetite_or_overeating_retro | 9561 | 0.45 | FALSE | 4 | Not: 5411, Sev: 1880, Mor: 399, Nea: 196 |
| phq.feeling_bad_failure_family_retro | 9562 | 0.45 | FALSE | 4 | Not: 5513, Sev: 1893, Mor: 308, Nea: 171 |
| phq.trouble_concentrating_reading_newspaper_retro | 9563 | 0.45 | FALSE | 4 | Not: 5896, Sev: 1613, Mor: 258, Nea: 117 |
| phq.moving_fidgety_noticed_opposite_retro | 9564 | 0.45 | FALSE | 4 | Not: 7266, Sev: 462, Mor: 110, Nea: 45 |
| phq.dead_hurting_thoughts_retro | 9566 | 0.45 | FALSE | 4 | Not: 7179, Sev: 569, Mor: 88, Nea: 45 |
| phq.little_interest_or_pleasure_in_doing_things_base | 321 | 0.98 | FALSE | 4 | Not: 11336, Sev: 4565, Mor: 779, Nea: 446 |
| phq.feeling_down_depressed_or_hopeless_base | 329 | 0.98 | FALSE | 4 | Not: 11073, Sev: 5004, Mor: 729, Nea: 312 |
| phq.staying_asleep_sleeping_trouble_base | 316 | 0.98 | FALSE | 4 | Not: 8244, Sev: 5813, Mor: 1697, Nea: 1377 |
| phq.feeling_tired_or_having_little_energy_base | 320 | 0.98 | FALSE | 4 | Not: 7883, Sev: 6586, Mor: 1525, Nea: 1133 |
| phq.poor_appetite_or_overeating_base | 328 | 0.98 | FALSE | 4 | Not: 11592, Sev: 3487, Mor: 1244, Nea: 796 |
| phq.feeling_bad_failure_family_base | 331 | 0.98 | FALSE | 4 | Not: 13128, Sev: 2801, Mor: 715, Nea: 472 |
| phq.trouble_concentrating_reading_newspaper_base | 328 | 0.98 | FALSE | 4 | Not: 12198, Sev: 3678, Mor: 789, Nea: 454 |
| phq.moving_fidgety_noticed_opposite_base | 333 | 0.98 | FALSE | 4 | Not: 15805, Sev: 944, Mor: 227, Nea: 138 |
| phq.dead_hurting_thoughts_base | 338 | 0.98 | FALSE | 4 | Not: 16077, Sev: 801, Mor: 126, Nea: 105 |
| ocir.felt_pandemic_feelings | 16129 | 0.08 | FALSE | 5 | No : 630, A l: 563, Muc: 104, A l: 19 |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_retro | 16129 | 0.08 | FALSE | 5 | Not: 768, A l: 316, Mod: 118, A l: 73 |
| ocir.arranged_things_change_upset_retro | 16129 | 0.08 | FALSE | 5 | A l: 470, Not: 469, Mod: 193, A l: 117 |
| ocir.repeat_feel_numbers_retro | 16130 | 0.08 | FALSE | 5 | Not: 1148, A l: 107, Mod: 31, A l: 20 |
| ocir.clean_simply_wash_feel_retro | 16129 | 0.08 | FALSE | 5 | Not: 701, A l: 393, Mod: 137, A l: 57 |
| ocir.mind_upset_unpleasant_thoughts_retro | 16130 | 0.08 | FALSE | 5 | Not: 594, A l: 427, Mod: 156, A l: 93 |
| ocir.afraid_avoid_throwing_things_retro | 16130 | 0.08 | FALSE | 5 | Not: 604, A l: 411, Mod: 156, A l: 99 |
| ocir.light_switches_water_taps_retro | 16129 | 0.08 | FALSE | 5 | Not: 944, A l: 223, Mod: 82, A l: 45 |
| ocir.arranged_things_retro | 16130 | 0.08 | FALSE | 5 | Not: 563, A l: 427, Mod: 162, A l: 119 |
| ocir.good_feel_bad_numbers_retro | 16129 | 0.08 | FALSE | 5 | Not: 1070, A l: 118, Mod: 62, A l: 44 |
| ocir.hands_longer_wash_retro | 16129 | 0.08 | FALSE | 5 | Not: 818, A l: 287, Mod: 109, A l: 64 |
| ocir.saved_things_retro | 16129 | 0.08 | FALSE | 5 | Not: 795, A l: 297, Mod: 141, A l: 59 |
| ocir.frequently_difficulty_rid_nasty_retro | 16129 | 0.08 | FALSE | 5 | Not: 737, A l: 350, Mod: 114, A l: 79 |
| ocir.i_check_things_more_often_than_necessary_retro | 16129 | 0.08 | FALSE | 5 | Not: 553, A l: 421, Mod: 205, A l: 106 |
| ocir.arranged_properly_objects_upset_retro | 16129 | 0.08 | FALSE | 5 | Not: 548, A l: 411, Mod: 201, A l: 122 |
| ocir.feel_compelled_count_things_retro | 16129 | 0.08 | FALSE | 5 | Not: 952, A l: 196, Mod: 75, A l: 67 |
| ocir.strangers_touch_touched_difficult_retro | 16129 | 0.08 | FALSE | 5 | Not: 614, A l: 364, Mod: 152, A l: 109 |
| ocir.control_difficult_find_thoughts_retro | 16130 | 0.08 | FALSE | 5 | Not: 533, A l: 413, Mod: 203, A l: 116 |
| ocir.i_collect_things_i_dont_need_retro | 16129 | 0.08 | FALSE | 5 | Not: 813, A l: 294, Mod: 121, A l: 62 |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_base | 16759 | 0.04 | FALSE | 5 | Not: 460, A l: 148, Mod: 37, A l: 29 |
| ocir.arranged_things_change_upset_base | 16759 | 0.04 | FALSE | 5 | Not: 285, A l: 261, Mod: 70, A l: 45 |
| ocir.repeat_feel_numbers_base | 16760 | 0.04 | FALSE | 5 | Not: 630, A l: 41, Mod: 10, A l: 3 |
| ocir.clean_simply_wash_feel_base | 16759 | 0.04 | FALSE | 5 | Not: 498, A l: 139, Mod: 34, A l: 14 |
| ocir.mind_upset_unpleasant_thoughts_base | 16759 | 0.04 | FALSE | 5 | Not: 345, A l: 240, Mod: 67, A l: 21 |
| ocir.afraid_avoid_throwing_things_base | 16759 | 0.04 | FALSE | 5 | Not: 347, A l: 225, Mod: 69, A l: 32 |
| ocir.light_switches_water_taps_base | 16759 | 0.04 | FALSE | 5 | Not: 496, A l: 133, Mod: 28, A l: 20 |
| ocir.arranged_things_base | 16759 | 0.04 | FALSE | 5 | Not: 324, A l: 224, Mod: 75, A l: 40 |
| ocir.good_feel_bad_numbers_base | 16759 | 0.04 | FALSE | 5 | Not: 581, A l: 64, Mod: 25, A l: 10 |
| ocir.hands_longer_wash_base | 16759 | 0.04 | FALSE | 5 | Not: 506, A l: 118, Mod: 30, A l: 30 |
| ocir.saved_things_base | 16759 | 0.04 | FALSE | 5 | Not: 457, A l: 156, Mod: 45, A l: 23 |
| ocir.frequently_difficulty_rid_nasty_base | 16759 | 0.04 | FALSE | 5 | Not: 409, A l: 183, Mod: 57, A l: 25 |
| ocir.i_check_things_more_often_than_necessary_base | 16759 | 0.04 | FALSE | 5 | Not: 383, A l: 214, Mod: 49, A l: 29 |
| ocir.arranged_properly_objects_upset_base | 16759 | 0.04 | FALSE | 5 | Not: 324, A l: 240, Mod: 68, A l: 38 |
| ocir.feel_compelled_count_things_base | 16759 | 0.04 | FALSE | 5 | Not: 562, A l: 85, Mod: 24, A l: 13 |
| ocir.strangers_touch_touched_difficult_base | 16759 | 0.04 | FALSE | 5 | Not: 472, A l: 128, Mod: 45, A l: 30 |
| ocir.control_difficult_find_thoughts_base | 16759 | 0.04 | FALSE | 5 | Not: 351, A l: 230, Mod: 61, A l: 33 |
| ocir.i_collect_things_i_dont_need_base | 16759 | 0.04 | FALSE | 5 | Not: 434, A l: 154, Mod: 56, A l: 28 |
| alsfrs.limb_weakness_noticed_past | 1715 | 0.90 | FALSE | 2 | No: 14134, Yes: 1598 |
| alsfrs.normal | 15843 | 0.09 | FALSE | 2 | Nor: 1218, Not: 386 |
| alsfrs.slow_or_sloppy_all_words_are_legible | 15843 | 0.09 | FALSE | 2 | Not: 1444, Slo: 160 |
| alsfrs.not_all_words_are_legible | 15843 | 0.09 | FALSE | 2 | Not: 1464, Not: 140 |
| alsfrs.able_to_grip_pen | 15843 | 0.09 | FALSE | 2 | Not: 1545, Abl: 59 |
| alsfrs.unable_to_grip_pen | 15843 | 0.09 | FALSE | 2 | Not: 1527, Una: 77 |
| alsfrs.have_you_noticed_any_difficulty_walking | 15843 | 0.09 | FALSE | 5 | Nor: 904, Ear: 519, Nee: 160, Abl: 12 |
| alsfrs.do_you_have_any_difficulty_climbing_stairs | 15843 | 0.09 | FALSE | 5 | Nor: 851, Slo: 384, Mil: 207, Nee: 119 |
| ess.felt_excessively_sleepy_past | 1709 | 0.90 | FALSE | 2 | No: 12130, Yes: 3608 |
| ess.sitting_and_reading | 13847 | 0.21 | FALSE | 4 | Sli: 1545, Mod: 932, Wou: 684, Hig: 439 |
| ess.watching_tv | 13851 | 0.21 | FALSE | 4 | Sli: 1525, Mod: 1037, Wou: 521, Hig: 513 |
| ess.sitting_inactive_in_a_public_place | 13852 | 0.21 | FALSE | 4 | Wou: 2264, Sli: 964, Mod: 294, Hig: 73 |
| ess.break_passenger_car_hour | 13849 | 0.21 | FALSE | 4 | Sli: 1320, Wou: 1305, Mod: 590, Hig: 383 |
| ess.afternoon_rest_circumstances_lying | 13848 | 0.21 | FALSE | 4 | Hig: 1253, Mod: 1006, Sli: 956, Wou: 384 |
| ess.sitting_and_talking_to_someone | 13845 | 0.21 | FALSE | 4 | Wou: 3203, Sli: 321, Mod: 61, Hig: 17 |
| ess.sitting_quietly_after_a_lunch_without_alcohol | 13846 | 0.21 | FALSE | 4 | Wou: 1523, Sli: 1398, Mod: 471, Hig: 209 |
| ess.car_minutes_stopped_traffic | 13850 | 0.21 | FALSE | 4 | Wou: 3259, Sli: 261, Mod: 58, Hig: 19 |
| ess.insomnia | 1734 | 0.90 | FALSE | 2 | Not: 15423, Ins: 290 |
| ess.narcolepsy | 1734 | 0.90 | FALSE | 2 | Not: 15704, Nar: 9 |
| ess.rem_sleep_behaviour_disorder | 1734 | 0.90 | FALSE | 2 | Not: 15690, REM: 23 |
| ess.restless_legs_syndrome | 1734 | 0.90 | FALSE | 2 | Not: 15292, Res: 421 |
| ess.sleep_apnea | 1734 | 0.90 | FALSE | 2 | Not: 15428, Sle: 285 |
| ess.sleep_terrors | 1734 | 0.90 | FALSE | 2 | Not: 15646, Sle: 67 |
| ess.sleepwalking | 1734 | 0.90 | FALSE | 2 | Not: 15667, Sle: 46 |
| ess.other | 1734 | 0.90 | FALSE | 2 | Not: 15548, Oth: 165 |
| ess.none | 1734 | 0.90 | FALSE | 2 | Non: 14578, Not: 1135 |
| midas.headaches_suffered_past_month | 1713 | 0.90 | FALSE | 2 | No: 11053, Yes: 4681 |
| midas.days_past_month_miss_work_school | 17447 | 0.00 | FALSE | 0 | Did: 0 |
| midas.days_past_month_work_school_half_productivity | 17447 | 0.00 | FALSE | 0 | Was: 0 |
| midas.days_past_month_miss_housework | 17447 | 0.00 | FALSE | 0 | Did: 0 |
| midas.days_past_month_housework_half_productivity | 17447 | 0.00 | FALSE | 0 | Was: 0 |
| midas.days_past_month_miss_social_activities | 17447 | 0.00 | FALSE | 0 | Did: 0 |
| nmss.ability_taste_food_smell | 1715 | 0.90 | FALSE | 2 | No: 15193, Yes: 539 |
| nmss.severe_taste_smell_loss | 16910 | 0.03 | FALSE | 6 | Mil: 145, Mod: 108, Min: 100, Sev: 72 |
| nmsw.drink_problems_choking_difficulty | 1728 | 0.90 | FALSE | 2 | No: 15104, Yes: 615 |
| nmsw.regularly_night_pass_urine | 1723 | 0.90 | FALSE | 2 | No: 10360, Yes: 5364 |
| nmsw.sex_difficult_finding | 1952 | 0.89 | FALSE | 2 | No: 14189, Yes: 1306 |
| nmsw.weak_standing_feeling_light | 1731 | 0.90 | FALSE | 2 | No: 12782, Yes: 2934 |
| nmsw.acting_moving_sleep_talking | 1749 | 0.90 | FALSE | 2 | No: 14548, Yes: 1150 |
| nmsw.double_vision | 1738 | 0.90 | FALSE | 2 | No: 15295, Yes: 414 |
| tinnitus.ears_noises_minutes_head | 1716 | 0.90 | FALSE | 2 | No: 13156, Yes: 2575 |
| tinnitus.ears_noises_minutes_head_frequency | 14872 | 0.15 | FALSE | 5 | Now: 1090, Som: 912, Now: 424, Not: 130 |
| tinnitus.noises_worry_worst_upset | 14874 | 0.15 | FALSE | 4 | Sli: 1318, Not: 663, Mod: 514, Sev: 78 |
Variable type: numeric
| skim_variable | n_missing | complete_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|
| ID | 0 | 1.00 | 27365.67 | 18420.76 | 1 | 11919.5 | 24113 | 42683 | 64460 | ▇▇▅▅▅ |
| Birthyear_unc_numeric | 0 | 1.00 | 65.38 | 14.28 | 9 | 54.0 | 63 | 75 | 104 | ▁▁▇▅▂ |
| Birthmonth_numeric | 0 | 1.00 | 6.44 | 3.43 | 1 | 3.0 | 6 | 9 | 12 | ▇▆▆▅▇ |
| Birthday_numeric | 0 | 1.00 | 15.73 | 8.81 | 1 | 8.0 | 16 | 23 | 31 | ▇▇▇▇▆ |
| Gender_numeric | 23 | 1.00 | 0.58 | 0.50 | 0 | 0.0 | 1 | 1 | 3 | ▆▇▁▁▁ |
| Sex_numeric | 0 | 1.00 | 0.57 | 0.49 | 0 | 0.0 | 1 | 1 | 1 | ▆▁▁▁▇ |
| Birthyear_numeric | 0 | 1.00 | 1965.38 | 14.28 | 1909 | 1954.0 | 1963 | 1975 | 2004 | ▁▁▇▅▂ |
| Age_uncleaned | 7 | 1.00 | 54.51 | 14.27 | 16 | 45.0 | 57 | 66 | 111 | ▂▅▇▁▁ |
| Ethnicity_numeric | 3378 | 0.81 | 1.05 | 0.31 | 1 | 1.0 | 1 | 1 | 4 | ▇▁▁▁▁ |
| Age | 7 | 1.00 | 54.51 | 14.27 | 16 | 45.0 | 57 | 66 | 111 | ▂▅▇▁▁ |
| age_category_numeric | 7 | 1.00 | 5.52 | 1.65 | 1 | 4.0 | 6 | 7 | 13 | ▂▅▇▁▁ |
| employment.phd_numeric | 13 | 1.00 | 0.04 | 0.19 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.masters_degree_or_equivalent_numeric | 13 | 1.00 | 0.14 | 0.35 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| employment.postgraduate_degree_or_equivalent_numeric | 13 | 1.00 | 0.11 | 0.32 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.bachelors_degree_or_equivalent_numeric | 13 | 1.00 | 0.42 | 0.49 | 0 | 0.0 | 0 | 1 | 1 | ▇▁▁▁▆ |
| employment.a_levelsas_levels_or_equivalent_numeric | 13 | 1.00 | 0.52 | 0.50 | 0 | 0.0 | 1 | 1 | 1 | ▇▁▁▁▇ |
| employment.o_levelsgcses_or_equivalent_numeric | 13 | 1.00 | 0.68 | 0.47 | 0 | 0.0 | 1 | 1 | 1 | ▃▁▁▁▇ |
| employment.cses_or_equivalent_numeric | 13 | 1.00 | 0.18 | 0.39 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| employment.nvq_or_hnd_or_hnc_or_equivalent_numeric | 13 | 1.00 | 0.24 | 0.43 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| employment.government_work_key_workers_numeric | 6946 | 0.60 | 2.69 | 3.68 | 0 | 0.0 | 1 | 5 | 11 | ▇▁▁▁▂ |
| employment.unemployed_numeric | 32 | 1.00 | 0.02 | 0.15 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.zerohours_contract_numeric | 32 | 1.00 | 0.02 | 0.13 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.stayathome_parent_or_carer_numeric | 32 | 1.00 | 0.02 | 0.15 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.retired_numeric | 32 | 1.00 | 0.36 | 0.48 | 0 | 0.0 | 0 | 1 | 1 | ▇▁▁▁▅ |
| employment.student_gcse_or_a_level_numeric | 32 | 1.00 | 0.00 | 0.04 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.student_university_numeric | 32 | 1.00 | 0.02 | 0.14 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.became_unemployed_numeric | 5905 | 0.66 | 0.03 | 0.17 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.furloughed_or_paid_leave_government_funded_numeric | 5905 | 0.66 | 0.10 | 0.30 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.furloughed_or_paid_leave_company_funded_numeric | 5905 | 0.66 | 0.02 | 0.13 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.paid_leave_furloughed_numeric | 5905 | 0.66 | 0.04 | 0.20 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| highest_education_numeric | 1057 | 0.94 | 3.11 | 1.13 | 1 | 2.0 | 4 | 4 | 4 | ▂▂▁▃▇ |
| key_worker_numeric | 57 | 1.00 | 0.34 | 0.48 | 0 | 0.0 | 0 | 1 | 1 | ▇▁▁▁▅ |
| anxiety_disorders_numeric | 141 | 0.99 | 0.16 | 0.37 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| mhd.specific_phobia_e.g._phobia_of_flying_numeric | 141 | 0.99 | 0.01 | 0.08 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.social_anxiety_or_social_phobia_numeric | 141 | 0.99 | 0.02 | 0.14 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| agoraphobia_panic_disorder_numeric | 141 | 0.99 | 0.06 | 0.23 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| depressive_disorders_numeric | 141 | 0.99 | 0.23 | 0.42 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| eating_disorders_numeric | 108 | 0.99 | 0.02 | 0.12 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| obsessive_compulsive_disorders_numeric | 141 | 0.99 | 0.01 | 0.12 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| psychotic_disorders_numeric | 193 | 0.99 | 0.00 | 0.06 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.mania_hypomania_bipolar_or_manicdepression_numeric | 141 | 0.99 | 0.01 | 0.08 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.posttraumatic_stress_disorder_ptsd_numeric | 141 | 0.99 | 0.02 | 0.14 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| autism_spectrum_disorder_numeric | 193 | 0.99 | 0.00 | 0.06 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.attention_deficit_hyperactivity_disorder_numeric | 193 | 0.99 | 0.00 | 0.06 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.personality_disorder_numeric | 193 | 0.99 | 0.01 | 0.08 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| personality_cluster_a_numeric | 206 | 0.99 | 0.00 | 0.02 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| personality_cluster_b_numeric | 206 | 0.99 | 0.00 | 0.07 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| personality_cluster_c_numeric | 206 | 0.99 | 0.00 | 0.02 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| depression_and_anxiety_numeric | 141 | 0.99 | 0.54 | 0.93 | 0 | 0.0 | 0 | 1 | 3 | ▇▁▁▂▁ |
| restricting_vs_binge_eating_eating_disorders_numeric | 108 | 0.99 | 0.02 | 0.19 | 0 | 0.0 | 0 | 0 | 2 | ▇▁▁▁▁ |
| bipolar_and_schizophrenia_numeric | 231 | 0.99 | 0.02 | 0.25 | 0 | 0.0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| control_numeric | 158 | 0.99 | 0.67 | 0.47 | 0 | 0.0 | 1 | 1 | 1 | ▃▁▁▁▇ |
| disorders_total_count | 244 | 0.99 | 0.46 | 0.83 | 0 | 0.0 | 0 | 1 | 7 | ▇▁▁▁▁ |
| comorbidity_total_count_numeric | 12255 | 0.30 | 0.52 | 0.80 | 0 | 0.0 | 0 | 1 | 6 | ▇▁▁▁▁ |
| comorbidity_total_count_factor_numeric | 12255 | 0.30 | 0.51 | 0.74 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.problems_made_difficult_care_numeric | 7647 | 0.56 | 1.47 | 0.62 | 1 | 1.0 | 1 | 2 | 4 | ▇▅▁▁▁ |
| gad.pandemic_felt_feelings_numeric | 784 | 0.96 | 2.58 | 0.72 | 1 | 2.0 | 3 | 3 | 5 | ▁▅▇▁▁ |
| gad.feeling_nervous_anxious_or_on_edge_retro_numeric | 10446 | 0.40 | 0.53 | 0.67 | 0 | 0.0 | 0 | 1 | 3 | ▇▆▁▁▁ |
| gad.control_worrying_stop_retro_numeric | 10444 | 0.40 | 0.40 | 0.65 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.worrying_too_much_about_different_things_retro_numeric | 10442 | 0.40 | 0.55 | 0.68 | 0 | 0.0 | 0 | 1 | 3 | ▇▆▁▁▁ |
| gad.trouble_relaxing_retro_numeric | 10439 | 0.40 | 0.44 | 0.68 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.sit_restless_hard_retro_numeric | 10442 | 0.40 | 0.20 | 0.50 | 0 | 0.0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| gad.becoming_easily_annoyed_or_irritable_retro_numeric | 10439 | 0.40 | 0.49 | 0.64 | 0 | 0.0 | 0 | 1 | 3 | ▇▅▁▁▁ |
| gad.awful_feeling_afraid_happen_retro_numeric | 10439 | 0.40 | 0.30 | 0.60 | 0 | 0.0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| gad.feeling_nervous_anxious_or_on_edge_base_numeric | 765 | 0.96 | 0.50 | 0.75 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.control_worrying_stop_base_numeric | 769 | 0.96 | 0.34 | 0.68 | 0 | 0.0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| gad.worrying_too_much_about_different_things_base_numeric | 768 | 0.96 | 0.43 | 0.72 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.trouble_relaxing_base_numeric | 764 | 0.96 | 0.46 | 0.75 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.sit_restless_hard_base_numeric | 765 | 0.96 | 0.22 | 0.56 | 0 | 0.0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| gad.becoming_easily_annoyed_or_irritable_base_numeric | 771 | 0.96 | 0.45 | 0.69 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.awful_feeling_afraid_happen_base_numeric | 765 | 0.96 | 0.34 | 0.67 | 0 | 0.0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| gad.sum_score_retro_raw | 0 | 1.00 | 1.17 | 2.57 | 0 | 0.0 | 0 | 1 | 21 | ▇▁▁▁▁ |
| gad.sum_score_base_raw | 0 | 1.00 | 2.62 | 3.88 | 0 | 0.0 | 1 | 4 | 21 | ▇▂▁▁▁ |
| na_per_person_gad_base | 0 | 1.00 | 0.31 | 1.43 | 0 | 0.0 | 0 | 0 | 7 | ▇▁▁▁▁ |
| na_per_person_gad_retro | 0 | 1.00 | 4.19 | 3.43 | 0 | 0.0 | 7 | 7 | 7 | ▆▁▁▁▇ |
| gad.sum_score_base | 781 | 0.96 | 2.74 | 3.92 | 0 | 0.0 | 1 | 4 | 21 | ▇▂▁▁▁ |
| gad.sum_score_retro | 10456 | 0.40 | 2.90 | 3.38 | 0 | 0.0 | 2 | 4 | 21 | ▇▂▁▁▁ |
| pcl.stressful_experience_repeated_images_base_numeric | 1194 | 0.93 | 1.37 | 0.75 | 1 | 1.0 | 1 | 1 | 5 | ▇▂▁▁▁ |
| pcl.stressful_experience_upset_reminded_base_numeric | 1204 | 0.93 | 1.45 | 0.81 | 1 | 1.0 | 1 | 2 | 5 | ▇▂▁▁▁ |
| pcl.stressful_situation_avoiding_activities_base_numeric | 1212 | 0.93 | 1.22 | 0.63 | 1 | 1.0 | 1 | 1 | 5 | ▇▁▁▁▁ |
| pcl.cut_people_feeling_distant_base_numeric | 1209 | 0.93 | 1.71 | 1.03 | 1 | 1.0 | 1 | 2 | 5 | ▇▃▁▁▁ |
| pcl.feeling_irritable_or_having_angry_outbursts_base_numeric | 1222 | 0.93 | 1.44 | 0.74 | 1 | 1.0 | 1 | 2 | 5 | ▇▃▁▁▁ |
| pcl.difficulty_concentrating_base_numeric | 1230 | 0.93 | 1.54 | 0.86 | 1 | 1.0 | 1 | 2 | 5 | ▇▃▁▁▁ |
| pcl.stressful_experience_repeated_images_retro_numeric | 13444 | 0.23 | 0.13 | 0.34 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| pcl.stressful_experience_upset_reminded_retro_numeric | 12358 | 0.29 | 0.17 | 0.38 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| pcl.stressful_situation_avoiding_activities_retro_numeric | 15223 | 0.13 | 0.16 | 0.37 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| pcl.cut_people_feeling_distant_retro_numeric | 10619 | 0.39 | 0.69 | 0.46 | 0 | 0.0 | 1 | 1 | 1 | ▃▁▁▁▇ |
| pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric | 12145 | 0.30 | 0.49 | 0.50 | 0 | 0.0 | 0 | 1 | 1 | ▇▁▁▁▇ |
| pcl.difficulty_concentrating_retro_numeric | 11441 | 0.34 | 0.49 | 0.50 | 0 | 0.0 | 0 | 1 | 1 | ▇▁▁▁▇ |
| pcl.sum_score_retro_raw | 0 | 1.00 | 0.69 | 1.15 | 0 | 0.0 | 0 | 1 | 6 | ▇▁▁▁▁ |
| pcl.sum_score_base_raw | 0 | 1.00 | 8.12 | 4.16 | 0 | 6.0 | 7 | 10 | 30 | ▆▇▂▁▁ |
| na_per_person_pcl_base | 0 | 1.00 | 0.42 | 1.51 | 0 | 0.0 | 0 | 0 | 6 | ▇▁▁▁▁ |
| na_per_person_pcl_retro | 0 | 1.00 | 4.31 | 1.86 | 0 | 3.0 | 5 | 6 | 6 | ▂▁▂▂▇ |
| pcl.sum_score_base | 1314 | 0.92 | 8.72 | 3.66 | 6 | 6.0 | 7 | 10 | 30 | ▇▂▁▁▁ |
| pcl.sum_score_retro | 16538 | 0.05 | 2.10 | 2.02 | 0 | 0.0 | 2 | 3 | 6 | ▇▂▃▁▃ |
| phq.problems_made_difficult_care_numeric | 4792 | 0.73 | 1.43 | 0.61 | 1 | 1.0 | 1 | 2 | 4 | ▇▅▁▁▁ |
| phq.pandemic_felt_feelings_numeric | 388 | 0.98 | 2.54 | 0.73 | 1 | 2.0 | 3 | 3 | 5 | ▁▅▇▁▁ |
| phq.little_interest_or_pleasure_in_doing_things_retro_numeric | 9564 | 0.45 | 0.37 | 0.62 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| phq.feeling_down_depressed_or_hopeless_retro_numeric | 9565 | 0.45 | 0.47 | 0.64 | 0 | 0.0 | 0 | 1 | 3 | ▇▅▁▁▁ |
| phq.staying_asleep_sleeping_trouble_retro_numeric | 9566 | 0.45 | 0.70 | 0.80 | 0 | 0.0 | 1 | 1 | 3 | ▇▇▁▂▁ |
| phq.feeling_tired_or_having_little_energy_retro_numeric | 9565 | 0.45 | 0.74 | 0.79 | 0 | 0.0 | 1 | 1 | 3 | ▇▇▁▂▁ |
| phq.poor_appetite_or_overeating_retro_numeric | 9561 | 0.45 | 0.41 | 0.70 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| phq.feeling_bad_failure_family_retro_numeric | 9562 | 0.45 | 0.38 | 0.67 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| phq.trouble_concentrating_reading_newspaper_retro_numeric | 9563 | 0.45 | 0.31 | 0.61 | 0 | 0.0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| phq.moving_fidgety_noticed_opposite_retro_numeric | 9564 | 0.45 | 0.10 | 0.39 | 0 | 0.0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| phq.dead_hurting_thoughts_retro_numeric | 9566 | 0.45 | 0.11 | 0.39 | 0 | 0.0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| phq.little_interest_or_pleasure_in_doing_things_base_numeric | 321 | 0.98 | 0.44 | 0.70 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| phq.feeling_down_depressed_or_hopeless_base_numeric | 329 | 0.98 | 0.43 | 0.66 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| phq.staying_asleep_sleeping_trouble_base_numeric | 316 | 0.98 | 0.78 | 0.92 | 0 | 0.0 | 1 | 1 | 3 | ▇▆▁▂▂ |
| phq.feeling_tired_or_having_little_energy_base_numeric | 320 | 0.98 | 0.76 | 0.87 | 0 | 0.0 | 1 | 1 | 3 | ▇▇▁▂▁ |
| phq.poor_appetite_or_overeating_base_numeric | 328 | 0.98 | 0.49 | 0.82 | 0 | 0.0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| phq.feeling_bad_failure_family_base_numeric | 331 | 0.98 | 0.33 | 0.69 | 0 | 0.0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| phq.trouble_concentrating_reading_newspaper_base_numeric | 328 | 0.98 | 0.39 | 0.70 | 0 | 0.0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| phq.moving_fidgety_noticed_opposite_base_numeric | 333 | 0.98 | 0.11 | 0.41 | 0 | 0.0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| phq.dead_hurting_thoughts_base_numeric | 338 | 0.98 | 0.08 | 0.35 | 0 | 0.0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| phq.sum_score_retro_raw | 0 | 1.00 | 1.63 | 3.22 | 0 | 0.0 | 0 | 2 | 27 | ▇▁▁▁▁ |
| phq.sum_score_base_raw | 0 | 1.00 | 3.73 | 4.47 | 0 | 0.0 | 2 | 5 | 27 | ▇▂▁▁▁ |
| na_per_person_phq_retro | 0 | 1.00 | 4.93 | 4.48 | 0 | 0.0 | 9 | 9 | 9 | ▆▁▁▁▇ |
| phq.missing_only_suicide_item_retro | 0 | 1.00 | 0.00 | 0.01 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| na_per_person_phq_base | 0 | 1.00 | 0.17 | 1.20 | 0 | 0.0 | 0 | 0 | 9 | ▇▁▁▁▁ |
| phq.missing_only_suicide_item_base | 0 | 1.00 | 0.00 | 0.02 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| phq.sum_score_base | 369 | 0.98 | 3.79 | 4.49 | 0 | 0.0 | 2 | 5 | 27 | ▇▂▁▁▁ |
| phq.sum_score_8items_base | 0 | 1.00 | 3.73 | 4.47 | 0 | 0.0 | 2 | 5 | 27 | ▇▂▁▁▁ |
| phq.sum_score_retro | 9588 | 0.45 | 3.60 | 3.97 | 0 | 1.0 | 2 | 5 | 27 | ▇▂▁▁▁ |
| phq.sum_score_8items_retro | 0 | 1.00 | 1.63 | 3.22 | 0 | 0.0 | 0 | 2 | 27 | ▇▁▁▁▁ |
| ocir.felt_pandemic_feelings_numeric | 16129 | 0.08 | 2.43 | 0.66 | 1 | 2.0 | 2 | 3 | 5 | ▁▇▇▁▁ |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_retro_numeric | 16129 | 0.08 | 0.72 | 1.05 | 0 | 0.0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.arranged_things_change_upset_retro_numeric | 16129 | 0.08 | 1.13 | 1.15 | 0 | 0.0 | 1 | 2 | 4 | ▇▇▃▂▁ |
| ocir.repeat_feel_numbers_retro_numeric | 16130 | 0.08 | 0.21 | 0.63 | 0 | 0.0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.clean_simply_wash_feel_retro_numeric | 16129 | 0.08 | 0.73 | 0.97 | 0 | 0.0 | 0 | 1 | 4 | ▇▅▂▁▁ |
| ocir.mind_upset_unpleasant_thoughts_retro_numeric | 16130 | 0.08 | 0.92 | 1.08 | 0 | 0.0 | 1 | 1 | 4 | ▇▆▂▁▁ |
| ocir.afraid_avoid_throwing_things_retro_numeric | 16130 | 0.08 | 0.92 | 1.09 | 0 | 0.0 | 1 | 1 | 4 | ▇▆▂▁▁ |
| ocir.light_switches_water_taps_retro_numeric | 16129 | 0.08 | 0.47 | 0.89 | 0 | 0.0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_retro_numeric | 16130 | 0.08 | 0.98 | 1.11 | 0 | 0.0 | 1 | 1 | 4 | ▇▆▂▂▁ |
| ocir.good_feel_bad_numbers_retro_numeric | 16129 | 0.08 | 0.36 | 0.86 | 0 | 0.0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.hands_longer_wash_retro_numeric | 16129 | 0.08 | 0.65 | 1.02 | 0 | 0.0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.saved_things_retro_numeric | 16129 | 0.08 | 0.65 | 0.97 | 0 | 0.0 | 0 | 1 | 4 | ▇▃▂▁▁ |
| ocir.frequently_difficulty_rid_nasty_retro_numeric | 16129 | 0.08 | 0.73 | 1.04 | 0 | 0.0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.i_check_things_more_often_than_necessary_retro_numeric | 16129 | 0.08 | 0.97 | 1.06 | 0 | 0.0 | 1 | 2 | 4 | ▇▆▃▂▁ |
| ocir.arranged_properly_objects_upset_retro_numeric | 16129 | 0.08 | 1.00 | 1.09 | 0 | 0.0 | 1 | 2 | 4 | ▇▆▃▂▁ |
| ocir.feel_compelled_count_things_retro_numeric | 16129 | 0.08 | 0.50 | 0.96 | 0 | 0.0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.strangers_touch_touched_difficult_retro_numeric | 16129 | 0.08 | 0.99 | 1.21 | 0 | 0.0 | 1 | 2 | 4 | ▇▅▂▂▁ |
| ocir.control_difficult_find_thoughts_retro_numeric | 16130 | 0.08 | 1.04 | 1.12 | 0 | 0.0 | 1 | 2 | 4 | ▇▆▃▂▁ |
| ocir.i_collect_things_i_dont_need_retro_numeric | 16129 | 0.08 | 0.63 | 0.98 | 0 | 0.0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_base_numeric | 16759 | 0.04 | 0.53 | 0.92 | 0 | 0.0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_change_upset_base_numeric | 16759 | 0.04 | 0.94 | 1.06 | 0 | 0.0 | 1 | 1 | 4 | ▇▇▂▁▁ |
| ocir.repeat_feel_numbers_base_numeric | 16760 | 0.04 | 0.12 | 0.46 | 0 | 0.0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.clean_simply_wash_feel_base_numeric | 16759 | 0.04 | 0.38 | 0.71 | 0 | 0.0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.mind_upset_unpleasant_thoughts_base_numeric | 16759 | 0.04 | 0.72 | 0.92 | 0 | 0.0 | 0 | 1 | 4 | ▇▆▂▁▁ |
| ocir.afraid_avoid_throwing_things_base_numeric | 16759 | 0.04 | 0.75 | 0.96 | 0 | 0.0 | 0 | 1 | 4 | ▇▅▂▁▁ |
| ocir.light_switches_water_taps_base_numeric | 16759 | 0.04 | 0.43 | 0.83 | 0 | 0.0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_base_numeric | 16759 | 0.04 | 0.86 | 1.06 | 0 | 0.0 | 1 | 1 | 4 | ▇▆▂▁▁ |
| ocir.good_feel_bad_numbers_base_numeric | 16759 | 0.04 | 0.26 | 0.70 | 0 | 0.0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.hands_longer_wash_base_numeric | 16759 | 0.04 | 0.41 | 0.81 | 0 | 0.0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.saved_things_base_numeric | 16759 | 0.04 | 0.50 | 0.84 | 0 | 0.0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.frequently_difficulty_rid_nasty_base_numeric | 16759 | 0.04 | 0.62 | 0.93 | 0 | 0.0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.i_check_things_more_often_than_necessary_base_numeric | 16759 | 0.04 | 0.66 | 0.92 | 0 | 0.0 | 0 | 1 | 4 | ▇▅▁▁▁ |
| ocir.arranged_properly_objects_upset_base_numeric | 16759 | 0.04 | 0.82 | 1.00 | 0 | 0.0 | 1 | 1 | 4 | ▇▆▂▁▁ |
| ocir.feel_compelled_count_things_base_numeric | 16759 | 0.04 | 0.27 | 0.67 | 0 | 0.0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.strangers_touch_touched_difficult_base_numeric | 16759 | 0.04 | 0.52 | 0.93 | 0 | 0.0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.control_difficult_find_thoughts_base_numeric | 16759 | 0.04 | 0.73 | 0.94 | 0 | 0.0 | 0 | 1 | 4 | ▇▅▂▁▁ |
| ocir.i_collect_things_i_dont_need_base_numeric | 16759 | 0.04 | 0.60 | 0.96 | 0 | 0.0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.sum_score_retro_raw | 4368 | 0.75 | 1.37 | 5.29 | 0 | 0.0 | 0 | 0 | 70 | ▇▁▁▁▁ |
| ocir.sum_score_base_raw | 4368 | 0.75 | 0.53 | 3.17 | 0 | 0.0 | 0 | 0 | 70 | ▇▁▁▁▁ |
| na_per_person_ocir_retro | 4368 | 0.75 | 16.19 | 5.42 | 0 | 18.0 | 18 | 18 | 18 | ▁▁▁▁▇ |
| na_per_person_ocir_base | 4368 | 0.75 | 17.05 | 4.02 | 0 | 18.0 | 18 | 18 | 18 | ▁▁▁▁▇ |
| ocir.sum_score_base | 16760 | 0.04 | 10.11 | 9.67 | 0 | 3.0 | 8 | 14 | 70 | ▇▂▁▁▁ |
| ocir.sum_score_retro | 16134 | 0.08 | 13.57 | 10.59 | 0 | 6.0 | 11 | 19 | 70 | ▇▃▁▁▁ |
| alsfrs.limb_weakness_noticed_past_numeric | 1715 | 0.90 | 0.10 | 0.30 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.normal_numeric | 15843 | 0.09 | 0.76 | 0.43 | 0 | 1.0 | 1 | 1 | 1 | ▂▁▁▁▇ |
| alsfrs.slow_or_sloppy_all_words_are_legible_numeric | 15843 | 0.09 | 0.10 | 0.30 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.not_all_words_are_legible_numeric | 15843 | 0.09 | 0.09 | 0.28 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.able_to_grip_pen_numeric | 15843 | 0.09 | 0.04 | 0.19 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.unable_to_grip_pen_numeric | 15843 | 0.09 | 0.05 | 0.21 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.have_you_noticed_any_difficulty_walking_numeric | 15843 | 0.09 | 0.57 | 0.75 | 0 | 0.0 | 0 | 1 | 4 | ▇▅▂▁▁ |
| alsfrs.do_you_have_any_difficulty_climbing_stairs_numeric | 15843 | 0.09 | 0.83 | 1.08 | 0 | 0.0 | 0 | 1 | 4 | ▇▃▂▁▁ |
| ess.felt_excessively_sleepy_past_numeric | 1709 | 0.90 | 0.23 | 0.42 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| ess.sitting_and_reading_numeric | 13847 | 0.21 | 1.31 | 0.92 | 0 | 1.0 | 1 | 2 | 3 | ▃▇▁▅▂ |
| ess.watching_tv_numeric | 13851 | 0.21 | 1.43 | 0.91 | 0 | 1.0 | 1 | 2 | 3 | ▃▇▁▆▃ |
| ess.sitting_inactive_in_a_public_place_numeric | 13852 | 0.21 | 0.49 | 0.73 | 0 | 0.0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| ess.break_passenger_car_hour_numeric | 13849 | 0.21 | 1.01 | 0.98 | 0 | 0.0 | 1 | 2 | 3 | ▇▇▁▃▂ |
| ess.afternoon_rest_circumstances_lying_numeric | 13848 | 0.21 | 1.87 | 1.01 | 0 | 1.0 | 2 | 3 | 3 | ▂▆▁▆▇ |
| ess.sitting_and_talking_to_someone_numeric | 13845 | 0.21 | 0.14 | 0.42 | 0 | 0.0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| ess.sitting_quietly_after_a_lunch_without_alcohol_numeric | 13846 | 0.21 | 0.82 | 0.87 | 0 | 0.0 | 1 | 1 | 3 | ▇▇▁▂▁ |
| ess.car_minutes_stopped_traffic_numeric | 13850 | 0.21 | 0.12 | 0.41 | 0 | 0.0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| ess.insomnia_numeric | 1734 | 0.90 | 0.02 | 0.13 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.narcolepsy_numeric | 1734 | 0.90 | 0.00 | 0.02 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.rem_sleep_behaviour_disorder_numeric | 1734 | 0.90 | 0.00 | 0.04 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.restless_legs_syndrome_numeric | 1734 | 0.90 | 0.03 | 0.16 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.sleep_apnea_numeric | 1734 | 0.90 | 0.02 | 0.13 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.sleep_terrors_numeric | 1734 | 0.90 | 0.00 | 0.07 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.sleepwalking_numeric | 1734 | 0.90 | 0.00 | 0.05 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.other_numeric | 1734 | 0.90 | 0.01 | 0.10 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.none_numeric | 1734 | 0.90 | 0.93 | 0.26 | 0 | 1.0 | 1 | 1 | 1 | ▁▁▁▁▇ |
| midas.headaches_suffered_past_month_numeric | 1713 | 0.90 | 0.30 | 0.46 | 0 | 0.0 | 0 | 1 | 1 | ▇▁▁▁▃ |
| midas.days_past_month_miss_work_school_numeric | 13284 | 0.24 | 1.10 | 3.49 | 0 | 0.0 | 0 | 0 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_work_school_half_productivity_numeric | 13459 | 0.23 | 1.33 | 3.59 | 0 | 0.0 | 0 | 1 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_miss_housework_numeric | 13273 | 0.24 | 2.44 | 4.73 | 0 | 0.0 | 0 | 3 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_housework_half_productivity_numeric | 13328 | 0.24 | 2.62 | 5.07 | 0 | 0.0 | 0 | 3 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_miss_social_activities_numeric | 13556 | 0.22 | 1.18 | 3.72 | 0 | 0.0 | 0 | 0 | 31 | ▇▁▁▁▁ |
| nmss.ability_taste_food_smell_numeric | 1715 | 0.90 | 0.03 | 0.18 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmss.severe_taste_smell_loss_numeric | 16910 | 0.03 | 2.28 | 1.45 | 0 | 1.0 | 2 | 3 | 5 | ▇▇▅▃▂ |
| nmsw.drink_problems_choking_difficulty_numeric | 1728 | 0.90 | 0.04 | 0.19 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmsw.regularly_night_pass_urine_numeric | 1723 | 0.90 | 0.34 | 0.47 | 0 | 0.0 | 0 | 1 | 1 | ▇▁▁▁▅ |
| nmsw.sex_difficult_finding_numeric | 1952 | 0.89 | 0.08 | 0.28 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmsw.weak_standing_feeling_light_numeric | 1731 | 0.90 | 0.19 | 0.39 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| nmsw.acting_moving_sleep_talking_numeric | 1749 | 0.90 | 0.07 | 0.26 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmsw.double_vision_numeric | 1738 | 0.90 | 0.03 | 0.16 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| tinnitus.ears_noises_minutes_head_numeric | 1716 | 0.90 | 0.16 | 0.37 | 0 | 0.0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| tinnitus.ears_noises_minutes_head_frequency_numeric | 14872 | 0.15 | 2.95 | 1.02 | 0 | 2.0 | 3 | 4 | 4 | ▁▁▇▃▇ |
| tinnitus.noises_worry_worst_upset_numeric | 14874 | 0.15 | 1.00 | 0.76 | 0 | 0.0 | 1 | 1 | 3 | ▅▇▁▃▁ |
Variable type: POSIXct
| skim_variable | n_missing | complete_rate | min | max | median | n_unique |
|---|---|---|---|---|---|---|
| startDate.coping | 0 | 1 | 2020-05-01 18:29:32 | 2020-09-23 18:42:10 | 2020-05-12 06:02:28 | 17119 |
Check duplicates again to be saved +++KLP: RAMP: More than one column: Age, Sex, Login ID; if they match on all 3 then we treat them as a duplicate; otherwise we are going to rename the Login ID +++KT: No duplicates identified by ID in GLAD. +++MD: Duplicates have been removed in cleaning script for NBR. No duplicates at this stage.
FALSE
17447 #Exclusion Exclude those without sex, gender, age and incomplete PHQ/GAD items Create a new new object for each exclusion step, e.g., data.no_sex, data.no_gender and data.no_sex.no_age
[1] "N = 0 were excluded because they did not report their sex"[1] 17447 401[1] 17424 401[1] 2323 were excluded because they did not report their sex
[1] 17424 401[1] 17417 401[1] 7dim(dat.no.sex.no.gender)[1]-dim(dat.no.sex.no.gender.no.age)[1] were excluded because they did not report their age
Exclusion of inflammatory bowel disease (IBD) and GLAD BioResource (NBR) cohort ++MD: 3,410 participants from NBR IBD cohort excluded ++KT: 3 duplicated GLAD participants are excluded
[1] 3428##Create tidy data on which the exclusion criteria have been applied Complete sex, gender, age and missingness information applied.
| Name | dat |
| Number of rows | 13989 |
| Number of columns | 401 |
| _______________________ | |
| Column type frequency: | |
| character | 5 |
| Date | 1 |
| factor | 182 |
| logical | 1 |
| numeric | 211 |
| POSIXct | 1 |
| ________________________ | |
| Group variables | None |
Variable type: character
| skim_variable | n_missing | complete_rate | min | max | empty | n_unique | whitespace |
|---|---|---|---|---|---|---|---|
| Sample | 0 | 1.00 | 6 | 6 | 0 | 1 | 0 |
| Cohort | 0 | 1.00 | 5 | 8 | 0 | 5 | 0 |
| Ethnicity.unc | 2981 | 0.79 | 1 | 1 | 0 | 18 | 0 |
| Cohort_numeric | 0 | 1.00 | 5 | 8 | 0 | 5 | 0 |
| Ethnicity.unc_numeric | 2981 | 0.79 | 1 | 1 | 0 | 18 | 0 |
Variable type: Date
| skim_variable | n_missing | complete_rate | min | max | median | n_unique |
|---|---|---|---|---|---|---|
| Birthdate | 0 | 1 | 1909-09-12 | 2004-05-08 | 1962-06-22 | 9641 |
Variable type: factor
| skim_variable | n_missing | complete_rate | ordered | n_unique | top_counts |
|---|---|---|---|---|---|
| Birthyear_unc | 0 | 1.00 | FALSE | 80 | Pro: 466, Pro: 454, Pro: 448, Pro: 444 |
| Birthmonth | 0 | 1.00 | FALSE | 12 | Pro: 1279, Pro: 1231, Pro: 1193, Pro: 1179 |
| Birthday | 0 | 1.00 | FALSE | 31 | Pro: 509, Pro: 503, Pro: 489, Pro: 488 |
| Gender_unc | 0 | 1.00 | FALSE | 4 | Fem: 7947, Mal: 6001, Non: 28, Pre: 13 |
| Sex | 0 | 1.00 | FALSE | 2 | Fem: 7974, Mal: 6015 |
| Ethnicity_full | 3114 | 0.78 | FALSE | 17 | Whi: 9930, Whi: 460, Whi: 148, Asi: 69 |
| Ethnicity_unc | 3114 | 0.78 | FALSE | 4 | Whi: 10551, Asi: 146, Mix: 126, Bla: 52 |
| Gender | 0 | 1.00 | FALSE | 4 | Fem: 7947, Mal: 6001, Non: 28, Pre: 13 |
| Ethnicity | 3114 | 0.78 | FALSE | 4 | Whi: 10551, Asi: 146, Mix: 126, Bla: 52 |
| age_category | 0 | 1.00 | FALSE | 13 | 56-: 4115, 46-: 2855, 66-: 2031, 36-: 1571 |
| employment.phd | 7 | 1.00 | FALSE | 2 | Not: 13389, PhD: 593 |
| employment.masters_degree_or_equivalent | 7 | 1.00 | FALSE | 2 | Not: 11800, Mas: 2182 |
| employment.postgraduate_degree_or_equivalent | 7 | 1.00 | FALSE | 2 | Not: 12355, Pos: 1627 |
| employment.bachelors_degree_or_equivalent | 7 | 1.00 | FALSE | 2 | Not: 7853, Bac: 6129 |
| employment.a_levelsas_levels_or_equivalent | 7 | 1.00 | FALSE | 2 | A l: 7496, Not: 6486 |
| employment.o_levelsgcses_or_equivalent | 7 | 1.00 | FALSE | 2 | O l: 9575, Not: 4407 |
| employment.cses_or_equivalent | 7 | 1.00 | FALSE | 2 | Not: 11417, CSE: 2565 |
| employment.nvq_or_hnd_or_hnc_or_equivalent | 7 | 1.00 | FALSE | 2 | Not: 10843, NVQ: 3139 |
| employment.government_work_key_workers | 5661 | 0.60 | FALSE | 11 | Non: 3568, Hea: 1477, Edu: 825, Oth: 731 |
| employment.unemployed | 22 | 1.00 | FALSE | 2 | Not: 13698, Une: 269 |
| employment.zerohours_contract | 22 | 1.00 | FALSE | 2 | Not: 13725, Zer: 242 |
| employment.stayathome_parent_or_carer | 22 | 1.00 | FALSE | 2 | Not: 13667, Sta: 300 |
| employment.retired | 22 | 1.00 | FALSE | 2 | Not: 8706, Ret: 5261 |
| employment.student_gcse_or_a_level | 22 | 1.00 | FALSE | 2 | Not: 13949, Stu: 18 |
| employment.student_university | 22 | 1.00 | FALSE | 2 | Not: 13700, Stu: 267 |
| employment.became_unemployed | 4974 | 0.64 | FALSE | 2 | Not: 8757, Bec: 258 |
| employment.furloughed_or_paid_leave_government_funded | 4974 | 0.64 | FALSE | 2 | Not: 8218, Fur: 797 |
| employment.furloughed_or_paid_leave_company_funded | 4974 | 0.64 | FALSE | 2 | Not: 8896, Fur: 119 |
| employment.paid_leave_furloughed | 4974 | 0.64 | FALSE | 2 | Not: 8662, Fur: 353 |
| highest_education | 757 | 0.95 | FALSE | 4 | Uni: 7417, A-l: 2491, GCS: 2009, NVQ: 1315 |
| key_worker | 32 | 1.00 | FALSE | 2 | No : 9197, Key: 4760 |
| anxiety_disorders | 77 | 0.99 | FALSE | 2 | No : 11942, Anx: 1970 |
| mhd.specific_phobia_e.g._phobia_of_flying | 77 | 0.99 | FALSE | 2 | Not: 13831, Spe: 81 |
| mhd.social_anxiety_or_social_phobia | 77 | 0.99 | FALSE | 2 | Not: 13680, Soc: 232 |
| agoraphobia_panic_disorder | 77 | 0.99 | FALSE | 2 | No : 13250, Ago: 662 |
| depressive_disorders | 77 | 0.99 | FALSE | 2 | No : 10893, Dep: 3019 |
| eating_disorders | 63 | 1.00 | FALSE | 2 | No : 13705, Eat: 221 |
| obsessive_compulsive_disorders | 77 | 0.99 | FALSE | 2 | No : 13747, Obs: 165 |
| psychotic_disorders | 112 | 0.99 | FALSE | 2 | No : 13836, Psy: 41 |
| mhd.mania_hypomania_bipolar_or_manicdepression | 77 | 0.99 | FALSE | 2 | Not: 13827, Man: 85 |
| mhd.posttraumatic_stress_disorder_ptsd | 77 | 0.99 | FALSE | 2 | Not: 13658, Pos: 254 |
| autism_spectrum_disorder | 112 | 0.99 | FALSE | 2 | No : 13826, Aut: 51 |
| mhd.attention_deficit_hyperactivity_disorder | 112 | 0.99 | FALSE | 2 | Not: 13840, Att: 37 |
| mhd.personality_disorder | 112 | 0.99 | FALSE | 2 | Not: 13794, Per: 83 |
| personality_cluster_a | 122 | 0.99 | FALSE | 2 | No : 13863, Per: 4 |
| personality_cluster_b | 122 | 0.99 | FALSE | 2 | No : 13804, Per: 63 |
| personality_cluster_c | 122 | 0.99 | FALSE | 2 | No : 13861, Per: 6 |
| depression_and_anxiety | 77 | 0.99 | FALSE | 4 | No : 10169, Onl: 1773, Dep: 1246, Onl: 724 |
| restricting_vs_binge_eating_eating_disorders | 63 | 1.00 | FALSE | 3 | No : 13705, Ano: 117, Eat: 104 |
| bipolar_and_schizophrenia | 136 | 0.99 | FALSE | 4 | No : 13737, Onl: 75, Onl: 32, Psy: 9 |
| control | 92 | 0.99 | FALSE | 2 | Con: 9704, No : 4193 |
| comorbidity_total_count_factor | 10102 | 0.28 | FALSE | 4 | No : 2426, 1 c: 1104, 2 c: 256, 3+ : 101 |
| mhd.none_of_the_above | 77 | 0.99 | FALSE | 2 | Non: 9875, Not: 4037 |
| mhd.none_of_the_above.1 | 112 | 0.99 | FALSE | 2 | Non: 13532, Not: 345 |
| gad.problems_made_difficult_care | 6380 | 0.54 | FALSE | 4 | Not: 4606, Som: 2717, Ver: 201, Ext: 85 |
| gad.pandemic_felt_feelings | 492 | 0.96 | FALSE | 5 | No : 8101, A l: 4002, Muc: 927, A l: 344 |
| gad.feeling_nervous_anxious_or_on_edge_retro | 8624 | 0.38 | FALSE | 4 | Not: 3042, Sev: 2039, Mor: 210, Nea: 74 |
| gad.control_worrying_stop_retro | 8622 | 0.38 | FALSE | 4 | Not: 3743, Sev: 1378, Mor: 180, Nea: 66 |
| gad.worrying_too_much_about_different_things_retro | 8619 | 0.38 | FALSE | 4 | Not: 3000, Sev: 2069, Mor: 213, Nea: 88 |
| gad.trouble_relaxing_retro | 8617 | 0.38 | FALSE | 4 | Not: 3523, Sev: 1552, Mor: 200, Nea: 97 |
| gad.sit_restless_hard_retro | 8619 | 0.38 | FALSE | 4 | Not: 4578, Sev: 660, Mor: 96, Nea: 36 |
| gad.becoming_easily_annoyed_or_irritable_retro | 8616 | 0.38 | FALSE | 4 | Not: 3189, Sev: 1972, Mor: 154, Nea: 58 |
| gad.awful_feeling_afraid_happen_retro | 8617 | 0.38 | FALSE | 4 | Not: 4222, Sev: 956, Mor: 130, Nea: 64 |
| gad.feeling_nervous_anxious_or_on_edge_base | 478 | 0.97 | FALSE | 4 | Not: 8729, Sev: 3816, Mor: 597, Nea: 369 |
| gad.control_worrying_stop_base | 481 | 0.97 | FALSE | 4 | Not: 10599, Sev: 2153, Mor: 458, Nea: 298 |
| gad.worrying_too_much_about_different_things_base | 480 | 0.97 | FALSE | 4 | Not: 9505, Sev: 3122, Mor: 544, Nea: 338 |
| gad.trouble_relaxing_base | 477 | 0.97 | FALSE | 4 | Not: 9310, Sev: 3194, Mor: 598, Nea: 410 |
| gad.sit_restless_hard_base | 476 | 0.97 | FALSE | 4 | Not: 11508, Sev: 1548, Mor: 299, Nea: 158 |
| gad.becoming_easily_annoyed_or_irritable_base | 480 | 0.97 | FALSE | 4 | Not: 8988, Sev: 3749, Mor: 515, Nea: 257 |
| gad.awful_feeling_afraid_happen_base | 477 | 0.97 | FALSE | 4 | Not: 10483, Sev: 2354, Mor: 419, Nea: 256 |
| pcl.stressful_experience_repeated_images_base | 757 | 0.95 | FALSE | 5 | Not: 10216, A l: 2138, Mod: 483, Qui: 314 |
| pcl.stressful_experience_upset_reminded_base | 763 | 0.95 | FALSE | 5 | Not: 9352, A l: 2840, Mod: 580, Qui: 344 |
| pcl.stressful_situation_avoiding_activities_base | 768 | 0.95 | FALSE | 5 | Not: 11580, A l: 1052, Mod: 330, Qui: 186 |
| pcl.cut_people_feeling_distant_base | 766 | 0.95 | FALSE | 5 | Not: 7902, A l: 3203, Mod: 1037, Qui: 806 |
| pcl.feeling_irritable_or_having_angry_outbursts_base | 780 | 0.94 | FALSE | 5 | Not: 9083, A l: 3227, Mod: 568, Qui: 272 |
| pcl.difficulty_concentrating_base | 779 | 0.94 | FALSE | 5 | Not: 8599, A l: 3353, Mod: 707, Qui: 415 |
| pcl.stressful_experience_repeated_images_retro | 10979 | 0.22 | FALSE | 2 | No: 2640, Yes: 370 |
| pcl.stressful_experience_upset_reminded_retro | 10126 | 0.28 | FALSE | 2 | No: 3248, Yes: 615 |
| pcl.stressful_situation_avoiding_activities_retro | 12352 | 0.12 | FALSE | 2 | No: 1380, Yes: 257 |
| pcl.cut_people_feeling_distant_retro | 8677 | 0.38 | FALSE | 2 | Yes: 3686, No: 1626 |
| pcl.feeling_irritable_or_having_angry_outbursts_retro | 9872 | 0.29 | FALSE | 2 | No: 2118, Yes: 1999 |
| pcl.difficulty_concentrating_retro | 9390 | 0.33 | FALSE | 2 | No: 2339, Yes: 2260 |
| phq.problems_made_difficult_care | 4173 | 0.70 | FALSE | 4 | Not: 6435, Som: 3028, Ver: 256, Ext: 97 |
| phq.pandemic_felt_feelings | 260 | 0.98 | FALSE | 5 | No : 7646, A l: 4579, Muc: 991, A l: 366 |
| phq.little_interest_or_pleasure_in_doing_things_retro | 7933 | 0.43 | FALSE | 4 | Not: 4364, Sev: 1465, Mor: 158, Nea: 69 |
| phq.feeling_down_depressed_or_hopeless_retro | 7932 | 0.43 | FALSE | 4 | Not: 3749, Sev: 2067, Mor: 167, Nea: 74 |
| phq.staying_asleep_sleeping_trouble_retro | 7930 | 0.43 | FALSE | 4 | Not: 2931, Sev: 2476, Mor: 423, Nea: 229 |
| phq.feeling_tired_or_having_little_energy_retro | 7932 | 0.43 | FALSE | 4 | Not: 2875, Sev: 2618, Mor: 381, Nea: 183 |
| phq.poor_appetite_or_overeating_retro | 7930 | 0.43 | FALSE | 4 | Not: 4288, Sev: 1378, Mor: 266, Nea: 127 |
| phq.feeling_bad_failure_family_retro | 7929 | 0.43 | FALSE | 4 | Not: 4330, Sev: 1420, Mor: 187, Nea: 123 |
| phq.trouble_concentrating_reading_newspaper_retro | 7931 | 0.43 | FALSE | 4 | Not: 4643, Sev: 1177, Mor: 162, Nea: 76 |
| phq.moving_fidgety_noticed_opposite_retro | 7931 | 0.43 | FALSE | 4 | Not: 5653, Sev: 310, Mor: 66, Nea: 29 |
| phq.dead_hurting_thoughts_retro | 7932 | 0.43 | FALSE | 4 | Not: 5555, Sev: 411, Mor: 57, Nea: 34 |
| phq.little_interest_or_pleasure_in_doing_things_base | 199 | 0.99 | FALSE | 4 | Not: 9555, Sev: 3472, Mor: 496, Nea: 267 |
| phq.feeling_down_depressed_or_hopeless_base | 207 | 0.99 | FALSE | 4 | Not: 9330, Sev: 3773, Mor: 473, Nea: 206 |
| phq.staying_asleep_sleeping_trouble_base | 197 | 0.99 | FALSE | 4 | Not: 7009, Sev: 4663, Mor: 1209, Nea: 911 |
| phq.feeling_tired_or_having_little_energy_base | 202 | 0.99 | FALSE | 4 | Not: 6925, Sev: 5171, Mor: 1030, Nea: 661 |
| phq.poor_appetite_or_overeating_base | 207 | 0.99 | FALSE | 4 | Not: 9733, Sev: 2648, Mor: 868, Nea: 533 |
| phq.feeling_bad_failure_family_base | 211 | 0.98 | FALSE | 4 | Not: 10868, Sev: 2104, Mor: 497, Nea: 309 |
| phq.trouble_concentrating_reading_newspaper_base | 209 | 0.99 | FALSE | 4 | Not: 10147, Sev: 2789, Mor: 546, Nea: 298 |
| phq.moving_fidgety_noticed_opposite_base | 211 | 0.98 | FALSE | 4 | Not: 12895, Sev: 646, Mor: 146, Nea: 91 |
| phq.dead_hurting_thoughts_base | 215 | 0.98 | FALSE | 4 | Not: 13041, Sev: 576, Mor: 88, Nea: 69 |
| ocir.felt_pandemic_feelings | 13009 | 0.07 | FALSE | 5 | No : 475, A l: 418, Muc: 71, A l: 14 |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_retro | 13009 | 0.07 | FALSE | 5 | Not: 576, A l: 241, Mod: 81, A l: 51 |
| ocir.arranged_things_change_upset_retro | 13009 | 0.07 | FALSE | 5 | A l: 352, Not: 351, Mod: 147, A l: 82 |
| ocir.repeat_feel_numbers_retro | 13009 | 0.07 | FALSE | 5 | Not: 863, A l: 73, Mod: 24, A l: 11 |
| ocir.clean_simply_wash_feel_retro | 13009 | 0.07 | FALSE | 5 | Not: 537, A l: 290, Mod: 96, A l: 37 |
| ocir.mind_upset_unpleasant_thoughts_retro | 13010 | 0.07 | FALSE | 5 | Not: 443, A l: 318, Mod: 123, A l: 63 |
| ocir.afraid_avoid_throwing_things_retro | 13009 | 0.07 | FALSE | 5 | Not: 441, A l: 308, Mod: 125, A l: 74 |
| ocir.light_switches_water_taps_retro | 13009 | 0.07 | FALSE | 5 | Not: 706, A l: 167, Mod: 56, A l: 35 |
| ocir.arranged_things_retro | 13010 | 0.07 | FALSE | 5 | Not: 424, A l: 313, Mod: 123, A l: 87 |
| ocir.good_feel_bad_numbers_retro | 13009 | 0.07 | FALSE | 5 | Not: 804, A l: 81, Mod: 43, A l: 37 |
| ocir.hands_longer_wash_retro | 13009 | 0.07 | FALSE | 5 | Not: 627, A l: 207, Mod: 79, A l: 42 |
| ocir.saved_things_retro | 13009 | 0.07 | FALSE | 5 | Not: 600, A l: 222, Mod: 96, A l: 45 |
| ocir.frequently_difficulty_rid_nasty_retro | 13009 | 0.07 | FALSE | 5 | Not: 552, A l: 258, Mod: 86, A l: 61 |
| ocir.i_check_things_more_often_than_necessary_retro | 13009 | 0.07 | FALSE | 5 | Not: 420, A l: 312, Mod: 151, A l: 73 |
| ocir.arranged_properly_objects_upset_retro | 13009 | 0.07 | FALSE | 5 | Not: 413, A l: 311, Mod: 147, A l: 86 |
| ocir.feel_compelled_count_things_retro | 13009 | 0.07 | FALSE | 5 | Not: 709, A l: 149, Mod: 56, A l: 51 |
| ocir.strangers_touch_touched_difficult_retro | 13009 | 0.07 | FALSE | 5 | Not: 472, A l: 264, Mod: 113, A l: 77 |
| ocir.control_difficult_find_thoughts_retro | 13010 | 0.07 | FALSE | 5 | Not: 400, A l: 315, Mod: 150, A l: 84 |
| ocir.i_collect_things_i_dont_need_retro | 13009 | 0.07 | FALSE | 5 | Not: 602, A l: 228, Mod: 89, A l: 47 |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_base | 13484 | 0.04 | FALSE | 5 | Not: 342, A l: 107, Mod: 25, A l: 22 |
| ocir.arranged_things_change_upset_base | 13484 | 0.04 | FALSE | 5 | Not: 212, A l: 189, Mod: 55, A l: 32 |
| ocir.repeat_feel_numbers_base | 13484 | 0.04 | FALSE | 5 | Not: 456, A l: 35, Mod: 10, A l: 2 |
| ocir.clean_simply_wash_feel_base | 13484 | 0.04 | FALSE | 5 | Not: 378, A l: 97, Mod: 20, A l: 8 |
| ocir.mind_upset_unpleasant_thoughts_base | 13484 | 0.04 | FALSE | 5 | Not: 246, A l: 180, Mod: 53, A l: 16 |
| ocir.afraid_avoid_throwing_things_base | 13484 | 0.04 | FALSE | 5 | Not: 251, A l: 166, Mod: 53, A l: 24 |
| ocir.light_switches_water_taps_base | 13484 | 0.04 | FALSE | 5 | Not: 366, A l: 97, Mod: 20, A l: 15 |
| ocir.arranged_things_base | 13484 | 0.04 | FALSE | 5 | Not: 246, A l: 154, Mod: 59, A l: 30 |
| ocir.good_feel_bad_numbers_base | 13484 | 0.04 | FALSE | 5 | Not: 427, A l: 44, Mod: 19, A l: 9 |
| ocir.hands_longer_wash_base | 13484 | 0.04 | FALSE | 5 | Not: 384, A l: 81, Mod: 21, A l: 17 |
| ocir.saved_things_base | 13484 | 0.04 | FALSE | 5 | Not: 327, A l: 120, Mod: 36, A l: 17 |
| ocir.frequently_difficulty_rid_nasty_base | 13484 | 0.04 | FALSE | 5 | Not: 298, A l: 138, Mod: 40, A l: 19 |
| ocir.i_check_things_more_often_than_necessary_base | 13484 | 0.04 | FALSE | 5 | Not: 281, A l: 157, Mod: 35, A l: 23 |
| ocir.arranged_properly_objects_upset_base | 13484 | 0.04 | FALSE | 5 | Not: 245, A l: 170, Mod: 50, A l: 29 |
| ocir.feel_compelled_count_things_base | 13484 | 0.04 | FALSE | 5 | Not: 406, A l: 67, Mod: 18, A l: 11 |
| ocir.strangers_touch_touched_difficult_base | 13484 | 0.04 | FALSE | 5 | Not: 355, A l: 92, Mod: 32, A l: 16 |
| ocir.control_difficult_find_thoughts_base | 13484 | 0.04 | FALSE | 5 | Not: 252, A l: 175, Mod: 45, A l: 24 |
| ocir.i_collect_things_i_dont_need_base | 13484 | 0.04 | FALSE | 5 | Not: 312, A l: 119, Mod: 44, A l: 19 |
| alsfrs.limb_weakness_noticed_past | 1069 | 0.92 | FALSE | 2 | No: 11785, Yes: 1135 |
| alsfrs.normal | 12849 | 0.08 | FALSE | 2 | Nor: 873, Not: 267 |
| alsfrs.slow_or_sloppy_all_words_are_legible | 12849 | 0.08 | FALSE | 2 | Not: 1031, Slo: 109 |
| alsfrs.not_all_words_are_legible | 12849 | 0.08 | FALSE | 2 | Not: 1040, Not: 100 |
| alsfrs.able_to_grip_pen | 12849 | 0.08 | FALSE | 2 | Not: 1102, Abl: 38 |
| alsfrs.unable_to_grip_pen | 12849 | 0.08 | FALSE | 2 | Not: 1091, Una: 49 |
| alsfrs.have_you_noticed_any_difficulty_walking | 12847 | 0.08 | FALSE | 5 | Nor: 651, Ear: 350, Nee: 122, Abl: 11 |
| alsfrs.do_you_have_any_difficulty_climbing_stairs | 12849 | 0.08 | FALSE | 5 | Nor: 625, Slo: 258, Mil: 137, Nee: 87 |
| ess.felt_excessively_sleepy_past | 1065 | 0.92 | FALSE | 2 | No: 10296, Yes: 2628 |
| ess.sitting_and_reading | 11365 | 0.19 | FALSE | 4 | Sli: 1157, Mod: 659, Wou: 499, Hig: 309 |
| ess.watching_tv | 11370 | 0.19 | FALSE | 4 | Sli: 1126, Mod: 757, Wou: 386, Hig: 350 |
| ess.sitting_inactive_in_a_public_place | 11369 | 0.19 | FALSE | 4 | Wou: 1631, Sli: 717, Mod: 216, Hig: 56 |
| ess.break_passenger_car_hour | 11366 | 0.19 | FALSE | 4 | Sli: 979, Wou: 949, Mod: 413, Hig: 282 |
| ess.afternoon_rest_circumstances_lying | 11368 | 0.19 | FALSE | 4 | Hig: 878, Mod: 744, Sli: 693, Wou: 306 |
| ess.sitting_and_talking_to_someone | 11364 | 0.19 | FALSE | 4 | Wou: 2354, Sli: 223, Mod: 36, Hig: 12 |
| ess.sitting_quietly_after_a_lunch_without_alcohol | 11366 | 0.19 | FALSE | 4 | Wou: 1147, Sli: 1011, Mod: 328, Hig: 137 |
| ess.car_minutes_stopped_traffic | 11365 | 0.19 | FALSE | 4 | Wou: 2388, Sli: 187, Mod: 39, Hig: 10 |
| ess.insomnia | 1079 | 0.92 | FALSE | 2 | Not: 12685, Ins: 225 |
| ess.narcolepsy | 1079 | 0.92 | FALSE | 2 | Not: 12903, Nar: 7 |
| ess.rem_sleep_behaviour_disorder | 1079 | 0.92 | FALSE | 2 | Not: 12887, REM: 23 |
| ess.restless_legs_syndrome | 1079 | 0.92 | FALSE | 2 | Not: 12587, Res: 323 |
| ess.sleep_apnea | 1079 | 0.92 | FALSE | 2 | Not: 12701, Sle: 209 |
| ess.sleep_terrors | 1079 | 0.92 | FALSE | 2 | Not: 12857, Sle: 53 |
| ess.sleepwalking | 1079 | 0.92 | FALSE | 2 | Not: 12877, Sle: 33 |
| ess.other | 1079 | 0.92 | FALSE | 2 | Not: 12777, Oth: 133 |
| ess.none | 1079 | 0.92 | FALSE | 2 | Non: 12036, Not: 874 |
| midas.headaches_suffered_past_month | 1063 | 0.92 | FALSE | 2 | No: 9411, Yes: 3515 |
| midas.days_past_month_miss_work_school | 13989 | 0.00 | FALSE | 0 | Did: 0 |
| midas.days_past_month_work_school_half_productivity | 13989 | 0.00 | FALSE | 0 | Was: 0 |
| midas.days_past_month_miss_housework | 13989 | 0.00 | FALSE | 0 | Did: 0 |
| midas.days_past_month_housework_half_productivity | 13989 | 0.00 | FALSE | 0 | Was: 0 |
| midas.days_past_month_miss_social_activities | 13989 | 0.00 | FALSE | 0 | Did: 0 |
| nmss.ability_taste_food_smell | 1068 | 0.92 | FALSE | 2 | No: 12512, Yes: 409 |
| nmss.severe_taste_smell_loss | 13580 | 0.03 | FALSE | 6 | Mil: 110, Mod: 85, Min: 74, Sev: 54 |
| nmsw.drink_problems_choking_difficulty | 1078 | 0.92 | FALSE | 2 | No: 12458, Yes: 453 |
| nmsw.regularly_night_pass_urine | 1074 | 0.92 | FALSE | 2 | No: 8563, Yes: 4352 |
| nmsw.sex_difficult_finding | 1251 | 0.91 | FALSE | 2 | No: 11738, Yes: 1000 |
| nmsw.weak_standing_feeling_light | 1079 | 0.92 | FALSE | 2 | No: 10721, Yes: 2189 |
| nmsw.acting_moving_sleep_talking | 1094 | 0.92 | FALSE | 2 | No: 12049, Yes: 846 |
| nmsw.double_vision | 1086 | 0.92 | FALSE | 2 | No: 12589, Yes: 314 |
| tinnitus.ears_noises_minutes_head | 1069 | 0.92 | FALSE | 2 | No: 10896, Yes: 2024 |
| tinnitus.ears_noises_minutes_head_frequency | 11965 | 0.14 | FALSE | 5 | Now: 870, Som: 717, Now: 329, Not: 94 |
| tinnitus.noises_worry_worst_upset | 11967 | 0.14 | FALSE | 4 | Sli: 1055, Not: 537, Mod: 376, Sev: 54 |
Variable type: logical
| skim_variable | n_missing | complete_rate | mean | count |
|---|---|---|---|---|
| ID.dup | 0 | 1 | 0 | FAL: 13989 |
Variable type: numeric
| skim_variable | n_missing | complete_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|
| ID | 0 | 1.00 | 23518.00 | 17932.36 | 1 | 9599 | 19534 | 29418 | 64460 | ▇▇▃▂▃ |
| Birthyear_unc_numeric | 0 | 1.00 | 64.49 | 13.94 | 9 | 54 | 62 | 73 | 104 | ▁▁▇▅▂ |
| Birthmonth_numeric | 0 | 1.00 | 6.43 | 3.42 | 1 | 3 | 6 | 9 | 12 | ▇▅▅▅▇ |
| Birthday_numeric | 0 | 1.00 | 15.74 | 8.80 | 1 | 8 | 16 | 23 | 31 | ▇▇▇▇▆ |
| Gender_numeric | 0 | 1.00 | 0.57 | 0.50 | 0 | 0 | 1 | 1 | 3 | ▆▇▁▁▁ |
| Sex_numeric | 0 | 1.00 | 0.57 | 0.50 | 0 | 0 | 1 | 1 | 1 | ▆▁▁▁▇ |
| Birthyear_numeric | 0 | 1.00 | 1964.49 | 13.94 | 1909 | 1954 | 1962 | 1973 | 2004 | ▁▁▇▅▂ |
| Age_uncleaned | 0 | 1.00 | 55.40 | 13.94 | 16 | 47 | 58 | 66 | 111 | ▂▅▇▁▁ |
| Ethnicity_numeric | 3114 | 0.78 | 1.05 | 0.32 | 1 | 1 | 1 | 1 | 4 | ▇▁▁▁▁ |
| Age | 0 | 1.00 | 55.40 | 13.94 | 16 | 47 | 58 | 66 | 111 | ▂▅▇▁▁ |
| age_category_numeric | 0 | 1.00 | 5.62 | 1.62 | 1 | 5 | 6 | 7 | 13 | ▂▅▇▁▁ |
| employment.phd_numeric | 7 | 1.00 | 0.04 | 0.20 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.masters_degree_or_equivalent_numeric | 7 | 1.00 | 0.16 | 0.36 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| employment.postgraduate_degree_or_equivalent_numeric | 7 | 1.00 | 0.12 | 0.32 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.bachelors_degree_or_equivalent_numeric | 7 | 1.00 | 0.44 | 0.50 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▆ |
| employment.a_levelsas_levels_or_equivalent_numeric | 7 | 1.00 | 0.54 | 0.50 | 0 | 0 | 1 | 1 | 1 | ▇▁▁▁▇ |
| employment.o_levelsgcses_or_equivalent_numeric | 7 | 1.00 | 0.68 | 0.46 | 0 | 0 | 1 | 1 | 1 | ▃▁▁▁▇ |
| employment.cses_or_equivalent_numeric | 7 | 1.00 | 0.18 | 0.39 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| employment.nvq_or_hnd_or_hnc_or_equivalent_numeric | 7 | 1.00 | 0.22 | 0.42 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| employment.government_work_key_workers_numeric | 5661 | 0.60 | 2.67 | 3.66 | 0 | 0 | 1 | 5 | 11 | ▇▁▁▁▂ |
| employment.unemployed_numeric | 22 | 1.00 | 0.02 | 0.14 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.zerohours_contract_numeric | 22 | 1.00 | 0.02 | 0.13 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.stayathome_parent_or_carer_numeric | 22 | 1.00 | 0.02 | 0.14 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.retired_numeric | 22 | 1.00 | 0.38 | 0.48 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▅ |
| employment.student_gcse_or_a_level_numeric | 22 | 1.00 | 0.00 | 0.04 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.student_university_numeric | 22 | 1.00 | 0.02 | 0.14 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.became_unemployed_numeric | 4974 | 0.64 | 0.03 | 0.17 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.furloughed_or_paid_leave_government_funded_numeric | 4974 | 0.64 | 0.09 | 0.28 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.furloughed_or_paid_leave_company_funded_numeric | 4974 | 0.64 | 0.01 | 0.11 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.paid_leave_furloughed_numeric | 4974 | 0.64 | 0.04 | 0.19 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| highest_education_numeric | 757 | 0.95 | 3.16 | 1.11 | 1 | 2 | 4 | 4 | 4 | ▂▂▁▃▇ |
| key_worker_numeric | 32 | 1.00 | 0.34 | 0.47 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▅ |
| anxiety_disorders_numeric | 77 | 0.99 | 0.14 | 0.35 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.specific_phobia_e.g._phobia_of_flying_numeric | 77 | 0.99 | 0.01 | 0.08 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.social_anxiety_or_social_phobia_numeric | 77 | 0.99 | 0.02 | 0.13 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| agoraphobia_panic_disorder_numeric | 77 | 0.99 | 0.05 | 0.21 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| depressive_disorders_numeric | 77 | 0.99 | 0.22 | 0.41 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| eating_disorders_numeric | 63 | 1.00 | 0.02 | 0.12 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| obsessive_compulsive_disorders_numeric | 77 | 0.99 | 0.01 | 0.11 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| psychotic_disorders_numeric | 112 | 0.99 | 0.00 | 0.05 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.mania_hypomania_bipolar_or_manicdepression_numeric | 77 | 0.99 | 0.01 | 0.08 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.posttraumatic_stress_disorder_ptsd_numeric | 77 | 0.99 | 0.02 | 0.13 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| autism_spectrum_disorder_numeric | 112 | 0.99 | 0.00 | 0.06 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.attention_deficit_hyperactivity_disorder_numeric | 112 | 0.99 | 0.00 | 0.05 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.personality_disorder_numeric | 112 | 0.99 | 0.01 | 0.08 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| personality_cluster_a_numeric | 122 | 0.99 | 0.00 | 0.02 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| personality_cluster_b_numeric | 122 | 0.99 | 0.00 | 0.07 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| personality_cluster_c_numeric | 122 | 0.99 | 0.00 | 0.02 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| depression_and_anxiety_numeric | 77 | 0.99 | 0.50 | 0.90 | 0 | 0 | 0 | 1 | 3 | ▇▁▁▂▁ |
| restricting_vs_binge_eating_eating_disorders_numeric | 63 | 1.00 | 0.02 | 0.19 | 0 | 0 | 0 | 0 | 2 | ▇▁▁▁▁ |
| bipolar_and_schizophrenia_numeric | 136 | 0.99 | 0.02 | 0.24 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| control_numeric | 92 | 0.99 | 0.70 | 0.46 | 0 | 0 | 1 | 1 | 1 | ▃▁▁▁▇ |
| disorders_total_count | 141 | 0.99 | 0.42 | 0.79 | 0 | 0 | 0 | 1 | 7 | ▇▁▁▁▁ |
| comorbidity_total_count_numeric | 10102 | 0.28 | 0.51 | 0.79 | 0 | 0 | 0 | 1 | 6 | ▇▁▁▁▁ |
| comorbidity_total_count_factor_numeric | 10102 | 0.28 | 0.49 | 0.73 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.problems_made_difficult_care_numeric | 6380 | 0.54 | 1.44 | 0.61 | 1 | 1 | 1 | 2 | 4 | ▇▅▁▁▁ |
| gad.pandemic_felt_feelings_numeric | 492 | 0.96 | 2.61 | 0.69 | 1 | 2 | 3 | 3 | 5 | ▁▃▇▁▁ |
| gad.feeling_nervous_anxious_or_on_edge_retro_numeric | 8624 | 0.38 | 0.50 | 0.64 | 0 | 0 | 0 | 1 | 3 | ▇▆▁▁▁ |
| gad.control_worrying_stop_retro_numeric | 8622 | 0.38 | 0.36 | 0.61 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.worrying_too_much_about_different_things_retro_numeric | 8619 | 0.38 | 0.51 | 0.65 | 0 | 0 | 0 | 1 | 3 | ▇▆▁▁▁ |
| gad.trouble_relaxing_retro_numeric | 8617 | 0.38 | 0.42 | 0.65 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.sit_restless_hard_retro_numeric | 8619 | 0.38 | 0.18 | 0.47 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| gad.becoming_easily_annoyed_or_irritable_retro_numeric | 8616 | 0.38 | 0.46 | 0.61 | 0 | 0 | 0 | 1 | 3 | ▇▅▁▁▁ |
| gad.awful_feeling_afraid_happen_retro_numeric | 8617 | 0.38 | 0.26 | 0.56 | 0 | 0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| gad.feeling_nervous_anxious_or_on_edge_base_numeric | 478 | 0.97 | 0.45 | 0.71 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.control_worrying_stop_base_numeric | 481 | 0.97 | 0.29 | 0.64 | 0 | 0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| gad.worrying_too_much_about_different_things_base_numeric | 480 | 0.97 | 0.39 | 0.68 | 0 | 0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| gad.trouble_relaxing_base_numeric | 477 | 0.97 | 0.42 | 0.72 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.sit_restless_hard_base_numeric | 476 | 0.97 | 0.19 | 0.52 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| gad.becoming_easily_annoyed_or_irritable_base_numeric | 480 | 0.97 | 0.41 | 0.66 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| gad.awful_feeling_afraid_happen_base_numeric | 477 | 0.97 | 0.29 | 0.62 | 0 | 0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| gad.sum_score_retro_raw | 0 | 1.00 | 1.03 | 2.35 | 0 | 0 | 0 | 1 | 21 | ▇▁▁▁▁ |
| gad.sum_score_base_raw | 0 | 1.00 | 2.36 | 3.61 | 0 | 0 | 1 | 3 | 21 | ▇▁▁▁▁ |
| na_per_person_gad_base | 0 | 1.00 | 0.24 | 1.27 | 0 | 0 | 0 | 0 | 7 | ▇▁▁▁▁ |
| na_per_person_gad_retro | 0 | 1.00 | 4.31 | 3.40 | 0 | 0 | 7 | 7 | 7 | ▅▁▁▁▇ |
| gad.sum_score_base | 489 | 0.97 | 2.45 | 3.65 | 0 | 0 | 1 | 3 | 21 | ▇▁▁▁▁ |
| gad.sum_score_retro | 8631 | 0.38 | 2.69 | 3.15 | 0 | 0 | 2 | 4 | 21 | ▇▂▁▁▁ |
| pcl.stressful_experience_repeated_images_base_numeric | 757 | 0.95 | 1.33 | 0.71 | 1 | 1 | 1 | 1 | 5 | ▇▂▁▁▁ |
| pcl.stressful_experience_upset_reminded_base_numeric | 763 | 0.95 | 1.41 | 0.77 | 1 | 1 | 1 | 2 | 5 | ▇▂▁▁▁ |
| pcl.stressful_situation_avoiding_activities_base_numeric | 768 | 0.95 | 1.19 | 0.60 | 1 | 1 | 1 | 1 | 5 | ▇▁▁▁▁ |
| pcl.cut_people_feeling_distant_base_numeric | 766 | 0.95 | 1.67 | 1.00 | 1 | 1 | 1 | 2 | 5 | ▇▃▁▁▁ |
| pcl.feeling_irritable_or_having_angry_outbursts_base_numeric | 780 | 0.94 | 1.41 | 0.71 | 1 | 1 | 1 | 2 | 5 | ▇▃▁▁▁ |
| pcl.difficulty_concentrating_base_numeric | 779 | 0.94 | 1.50 | 0.82 | 1 | 1 | 1 | 2 | 5 | ▇▃▁▁▁ |
| pcl.stressful_experience_repeated_images_retro_numeric | 10979 | 0.22 | 0.12 | 0.33 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| pcl.stressful_experience_upset_reminded_retro_numeric | 10126 | 0.28 | 0.16 | 0.37 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| pcl.stressful_situation_avoiding_activities_retro_numeric | 12352 | 0.12 | 0.16 | 0.36 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| pcl.cut_people_feeling_distant_retro_numeric | 8677 | 0.38 | 0.69 | 0.46 | 0 | 0 | 1 | 1 | 1 | ▃▁▁▁▇ |
| pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric | 9872 | 0.29 | 0.49 | 0.50 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▇ |
| pcl.difficulty_concentrating_retro_numeric | 9390 | 0.33 | 0.49 | 0.50 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▇ |
| pcl.sum_score_retro_raw | 0 | 1.00 | 0.66 | 1.11 | 0 | 0 | 0 | 1 | 6 | ▇▁▁▁▁ |
| pcl.sum_score_base_raw | 0 | 1.00 | 8.04 | 3.87 | 0 | 6 | 7 | 9 | 30 | ▇▇▁▁▁ |
| na_per_person_pcl_base | 0 | 1.00 | 0.33 | 1.35 | 0 | 0 | 0 | 0 | 6 | ▇▁▁▁▁ |
| na_per_person_pcl_retro | 0 | 1.00 | 4.39 | 1.81 | 0 | 3 | 5 | 6 | 6 | ▂▁▂▂▇ |
| pcl.sum_score_base | 843 | 0.94 | 8.51 | 3.46 | 6 | 6 | 7 | 10 | 30 | ▇▂▁▁▁ |
| pcl.sum_score_retro | 13357 | 0.05 | 1.93 | 1.98 | 0 | 0 | 1 | 3 | 6 | ▇▂▂▁▂ |
| phq.problems_made_difficult_care_numeric | 4173 | 0.70 | 1.39 | 0.59 | 1 | 1 | 1 | 2 | 4 | ▇▃▁▁▁ |
| phq.pandemic_felt_feelings_numeric | 260 | 0.98 | 2.57 | 0.71 | 1 | 2 | 3 | 3 | 5 | ▁▅▇▁▁ |
| phq.little_interest_or_pleasure_in_doing_things_retro_numeric | 7933 | 0.43 | 0.33 | 0.58 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| phq.feeling_down_depressed_or_hopeless_retro_numeric | 7932 | 0.43 | 0.43 | 0.61 | 0 | 0 | 0 | 1 | 3 | ▇▅▁▁▁ |
| phq.staying_asleep_sleeping_trouble_retro_numeric | 7930 | 0.43 | 0.66 | 0.77 | 0 | 0 | 1 | 1 | 3 | ▇▇▁▁▁ |
| phq.feeling_tired_or_having_little_energy_retro_numeric | 7932 | 0.43 | 0.65 | 0.73 | 0 | 0 | 1 | 1 | 3 | ▇▇▁▁▁ |
| phq.poor_appetite_or_overeating_retro_numeric | 7930 | 0.43 | 0.38 | 0.67 | 0 | 0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| phq.feeling_bad_failure_family_retro_numeric | 7929 | 0.43 | 0.36 | 0.64 | 0 | 0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| phq.trouble_concentrating_reading_newspaper_retro_numeric | 7931 | 0.43 | 0.29 | 0.58 | 0 | 0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| phq.moving_fidgety_noticed_opposite_retro_numeric | 7931 | 0.43 | 0.09 | 0.36 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| phq.dead_hurting_thoughts_retro_numeric | 7932 | 0.43 | 0.10 | 0.38 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| phq.little_interest_or_pleasure_in_doing_things_base_numeric | 199 | 0.99 | 0.38 | 0.65 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| phq.feeling_down_depressed_or_hopeless_base_numeric | 207 | 0.99 | 0.39 | 0.63 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| phq.staying_asleep_sleeping_trouble_base_numeric | 197 | 0.99 | 0.71 | 0.88 | 0 | 0 | 0 | 1 | 3 | ▇▅▁▂▁ |
| phq.feeling_tired_or_having_little_energy_base_numeric | 202 | 0.99 | 0.67 | 0.81 | 0 | 0 | 0 | 1 | 3 | ▇▆▁▁▁ |
| phq.poor_appetite_or_overeating_base_numeric | 207 | 0.99 | 0.43 | 0.78 | 0 | 0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| phq.feeling_bad_failure_family_base_numeric | 211 | 0.98 | 0.29 | 0.64 | 0 | 0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| phq.trouble_concentrating_reading_newspaper_base_numeric | 209 | 0.99 | 0.35 | 0.66 | 0 | 0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| phq.moving_fidgety_noticed_opposite_base_numeric | 211 | 0.98 | 0.09 | 0.38 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| phq.dead_hurting_thoughts_base_numeric | 215 | 0.98 | 0.07 | 0.33 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| phq.sum_score_retro_raw | 0 | 1.00 | 1.42 | 2.92 | 0 | 0 | 0 | 2 | 27 | ▇▁▁▁▁ |
| phq.sum_score_base_raw | 0 | 1.00 | 3.33 | 4.14 | 0 | 0 | 2 | 5 | 27 | ▇▂▁▁▁ |
| na_per_person_phq_retro | 0 | 1.00 | 5.10 | 4.46 | 0 | 0 | 9 | 9 | 9 | ▆▁▁▁▇ |
| phq.missing_only_suicide_item_retro | 0 | 1.00 | 0.00 | 0.01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| na_per_person_phq_base | 0 | 1.00 | 0.13 | 1.06 | 0 | 0 | 0 | 0 | 9 | ▇▁▁▁▁ |
| phq.missing_only_suicide_item_base | 0 | 1.00 | 0.00 | 0.01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| phq.sum_score_base | 233 | 0.98 | 3.37 | 4.16 | 0 | 0 | 2 | 5 | 27 | ▇▂▁▁▁ |
| phq.sum_score_8items_base | 0 | 1.00 | 3.33 | 4.14 | 0 | 0 | 2 | 5 | 27 | ▇▂▁▁▁ |
| phq.sum_score_retro | 7943 | 0.43 | 3.28 | 3.68 | 0 | 1 | 2 | 4 | 27 | ▇▁▁▁▁ |
| phq.sum_score_8items_retro | 0 | 1.00 | 1.42 | 2.92 | 0 | 0 | 0 | 2 | 27 | ▇▁▁▁▁ |
| ocir.felt_pandemic_feelings_numeric | 13009 | 0.07 | 2.45 | 0.66 | 1 | 2 | 3 | 3 | 5 | ▁▇▇▁▁ |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_retro_numeric | 13009 | 0.07 | 0.69 | 1.03 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.arranged_things_change_upset_retro_numeric | 13009 | 0.07 | 1.11 | 1.13 | 0 | 0 | 1 | 2 | 4 | ▇▇▃▂▁ |
| ocir.repeat_feel_numbers_retro_numeric | 13009 | 0.07 | 0.19 | 0.62 | 0 | 0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.clean_simply_wash_feel_retro_numeric | 13009 | 0.07 | 0.69 | 0.94 | 0 | 0 | 0 | 1 | 4 | ▇▅▂▁▁ |
| ocir.mind_upset_unpleasant_thoughts_retro_numeric | 13010 | 0.07 | 0.90 | 1.06 | 0 | 0 | 1 | 1 | 4 | ▇▆▂▁▁ |
| ocir.afraid_avoid_throwing_things_retro_numeric | 13009 | 0.07 | 0.93 | 1.08 | 0 | 0 | 1 | 1 | 4 | ▇▆▂▂▁ |
| ocir.light_switches_water_taps_retro_numeric | 13009 | 0.07 | 0.46 | 0.88 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_retro_numeric | 13010 | 0.07 | 0.97 | 1.10 | 0 | 0 | 1 | 1 | 4 | ▇▆▂▂▁ |
| ocir.good_feel_bad_numbers_retro_numeric | 13009 | 0.07 | 0.34 | 0.85 | 0 | 0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.hands_longer_wash_retro_numeric | 13009 | 0.07 | 0.60 | 0.98 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.saved_things_retro_numeric | 13009 | 0.07 | 0.63 | 0.96 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.frequently_difficulty_rid_nasty_retro_numeric | 13009 | 0.07 | 0.72 | 1.02 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.i_check_things_more_often_than_necessary_retro_numeric | 13009 | 0.07 | 0.95 | 1.05 | 0 | 0 | 1 | 2 | 4 | ▇▆▃▂▁ |
| ocir.arranged_properly_objects_upset_retro_numeric | 13009 | 0.07 | 0.97 | 1.06 | 0 | 0 | 1 | 2 | 4 | ▇▆▃▂▁ |
| ocir.feel_compelled_count_things_retro_numeric | 13009 | 0.07 | 0.48 | 0.93 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.strangers_touch_touched_difficult_retro_numeric | 13009 | 0.07 | 0.96 | 1.19 | 0 | 0 | 1 | 1 | 4 | ▇▅▂▁▁ |
| ocir.control_difficult_find_thoughts_retro_numeric | 13010 | 0.07 | 1.01 | 1.09 | 0 | 0 | 1 | 2 | 4 | ▇▆▃▂▁ |
| ocir.i_collect_things_i_dont_need_retro_numeric | 13009 | 0.07 | 0.62 | 0.94 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_base_numeric | 13484 | 0.04 | 0.51 | 0.91 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_change_upset_base_numeric | 13484 | 0.04 | 0.92 | 1.04 | 0 | 0 | 1 | 1 | 4 | ▇▇▂▁▁ |
| ocir.repeat_feel_numbers_base_numeric | 13484 | 0.04 | 0.14 | 0.48 | 0 | 0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.clean_simply_wash_feel_base_numeric | 13484 | 0.04 | 0.33 | 0.67 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.mind_upset_unpleasant_thoughts_base_numeric | 13484 | 0.04 | 0.74 | 0.91 | 0 | 0 | 1 | 1 | 4 | ▇▆▂▁▁ |
| ocir.afraid_avoid_throwing_things_base_numeric | 13484 | 0.04 | 0.77 | 0.97 | 0 | 0 | 1 | 1 | 4 | ▇▅▂▁▁ |
| ocir.light_switches_water_taps_base_numeric | 13484 | 0.04 | 0.42 | 0.82 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_base_numeric | 13484 | 0.04 | 0.84 | 1.05 | 0 | 0 | 1 | 1 | 4 | ▇▅▂▁▁ |
| ocir.good_feel_bad_numbers_base_numeric | 13484 | 0.04 | 0.26 | 0.72 | 0 | 0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.hands_longer_wash_base_numeric | 13484 | 0.04 | 0.36 | 0.75 | 0 | 0 | 0 | 0 | 4 | ▇▂▁▁▁ |
| ocir.saved_things_base_numeric | 13484 | 0.04 | 0.52 | 0.85 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.frequently_difficulty_rid_nasty_base_numeric | 13484 | 0.04 | 0.62 | 0.93 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.i_check_things_more_often_than_necessary_base_numeric | 13484 | 0.04 | 0.66 | 0.92 | 0 | 0 | 0 | 1 | 4 | ▇▅▁▁▁ |
| ocir.arranged_properly_objects_upset_base_numeric | 13484 | 0.04 | 0.79 | 0.98 | 0 | 0 | 1 | 1 | 4 | ▇▆▂▁▁ |
| ocir.feel_compelled_count_things_base_numeric | 13484 | 0.04 | 0.29 | 0.69 | 0 | 0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.strangers_touch_touched_difficult_base_numeric | 13484 | 0.04 | 0.48 | 0.90 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.control_difficult_find_thoughts_base_numeric | 13484 | 0.04 | 0.74 | 0.93 | 0 | 0 | 1 | 1 | 4 | ▇▆▂▁▁ |
| ocir.i_collect_things_i_dont_need_base_numeric | 13484 | 0.04 | 0.61 | 0.95 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.sum_score_retro_raw | 3062 | 0.78 | 1.18 | 4.85 | 0 | 0 | 0 | 0 | 70 | ▇▁▁▁▁ |
| ocir.sum_score_base_raw | 3062 | 0.78 | 0.46 | 2.93 | 0 | 0 | 0 | 0 | 70 | ▇▁▁▁▁ |
| na_per_person_ocir_retro | 3062 | 0.78 | 16.39 | 5.14 | 0 | 18 | 18 | 18 | 18 | ▁▁▁▁▇ |
| na_per_person_ocir_base | 3062 | 0.78 | 17.17 | 3.78 | 0 | 18 | 18 | 18 | 18 | ▁▁▁▁▇ |
| ocir.sum_score_base | 13484 | 0.04 | 10.01 | 9.50 | 0 | 3 | 8 | 14 | 70 | ▇▂▁▁▁ |
| ocir.sum_score_retro | 13012 | 0.07 | 13.21 | 10.17 | 0 | 6 | 11 | 18 | 70 | ▇▃▁▁▁ |
| alsfrs.limb_weakness_noticed_past_numeric | 1069 | 0.92 | 0.09 | 0.28 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.normal_numeric | 12849 | 0.08 | 0.77 | 0.42 | 0 | 1 | 1 | 1 | 1 | ▂▁▁▁▇ |
| alsfrs.slow_or_sloppy_all_words_are_legible_numeric | 12849 | 0.08 | 0.10 | 0.29 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.not_all_words_are_legible_numeric | 12849 | 0.08 | 0.09 | 0.28 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.able_to_grip_pen_numeric | 12849 | 0.08 | 0.03 | 0.18 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.unable_to_grip_pen_numeric | 12849 | 0.08 | 0.04 | 0.20 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.have_you_noticed_any_difficulty_walking_numeric | 12847 | 0.08 | 0.58 | 0.77 | 0 | 0 | 0 | 1 | 4 | ▇▅▂▁▁ |
| alsfrs.do_you_have_any_difficulty_climbing_stairs_numeric | 12849 | 0.08 | 0.81 | 1.10 | 0 | 0 | 0 | 1 | 4 | ▇▃▂▁▁ |
| ess.felt_excessively_sleepy_past_numeric | 1065 | 0.92 | 0.20 | 0.40 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| ess.sitting_and_reading_numeric | 11365 | 0.19 | 1.30 | 0.91 | 0 | 1 | 1 | 2 | 3 | ▃▇▁▅▂ |
| ess.watching_tv_numeric | 11370 | 0.19 | 1.41 | 0.90 | 0 | 1 | 1 | 2 | 3 | ▃▇▁▆▂ |
| ess.sitting_inactive_in_a_public_place_numeric | 11369 | 0.19 | 0.50 | 0.74 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| ess.break_passenger_car_hour_numeric | 11366 | 0.19 | 1.01 | 0.97 | 0 | 0 | 1 | 2 | 3 | ▇▇▁▃▂ |
| ess.afternoon_rest_circumstances_lying_numeric | 11368 | 0.19 | 1.84 | 1.02 | 0 | 1 | 2 | 3 | 3 | ▃▆▁▇▇ |
| ess.sitting_and_talking_to_someone_numeric | 11364 | 0.19 | 0.13 | 0.41 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| ess.sitting_quietly_after_a_lunch_without_alcohol_numeric | 11366 | 0.19 | 0.79 | 0.85 | 0 | 0 | 1 | 1 | 3 | ▇▇▁▂▁ |
| ess.car_minutes_stopped_traffic_numeric | 11365 | 0.19 | 0.11 | 0.39 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| ess.insomnia_numeric | 1079 | 0.92 | 0.02 | 0.13 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.narcolepsy_numeric | 1079 | 0.92 | 0.00 | 0.02 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.rem_sleep_behaviour_disorder_numeric | 1079 | 0.92 | 0.00 | 0.04 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.restless_legs_syndrome_numeric | 1079 | 0.92 | 0.03 | 0.16 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.sleep_apnea_numeric | 1079 | 0.92 | 0.02 | 0.13 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.sleep_terrors_numeric | 1079 | 0.92 | 0.00 | 0.06 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.sleepwalking_numeric | 1079 | 0.92 | 0.00 | 0.05 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.other_numeric | 1079 | 0.92 | 0.01 | 0.10 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| ess.none_numeric | 1079 | 0.92 | 0.93 | 0.25 | 0 | 1 | 1 | 1 | 1 | ▁▁▁▁▇ |
| midas.headaches_suffered_past_month_numeric | 1063 | 0.92 | 0.27 | 0.44 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▃ |
| midas.days_past_month_miss_work_school_numeric | 10834 | 0.23 | 1.03 | 3.38 | 0 | 0 | 0 | 0 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_work_school_half_productivity_numeric | 10959 | 0.22 | 1.21 | 3.36 | 0 | 0 | 0 | 1 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_miss_housework_numeric | 10849 | 0.22 | 2.20 | 4.51 | 0 | 0 | 0 | 2 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_housework_half_productivity_numeric | 10897 | 0.22 | 2.36 | 4.77 | 0 | 0 | 0 | 3 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_miss_social_activities_numeric | 11027 | 0.21 | 1.09 | 3.63 | 0 | 0 | 0 | 0 | 31 | ▇▁▁▁▁ |
| nmss.ability_taste_food_smell_numeric | 1068 | 0.92 | 0.03 | 0.18 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmss.severe_taste_smell_loss_numeric | 13580 | 0.03 | 2.29 | 1.45 | 0 | 1 | 2 | 3 | 5 | ▇▇▆▃▂ |
| nmsw.drink_problems_choking_difficulty_numeric | 1078 | 0.92 | 0.04 | 0.18 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmsw.regularly_night_pass_urine_numeric | 1074 | 0.92 | 0.34 | 0.47 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▅ |
| nmsw.sex_difficult_finding_numeric | 1251 | 0.91 | 0.08 | 0.27 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmsw.weak_standing_feeling_light_numeric | 1079 | 0.92 | 0.17 | 0.38 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| nmsw.acting_moving_sleep_talking_numeric | 1094 | 0.92 | 0.07 | 0.25 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmsw.double_vision_numeric | 1086 | 0.92 | 0.02 | 0.15 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| tinnitus.ears_noises_minutes_head_numeric | 1069 | 0.92 | 0.16 | 0.36 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| tinnitus.ears_noises_minutes_head_frequency_numeric | 11965 | 0.14 | 2.96 | 1.02 | 0 | 2 | 3 | 4 | 4 | ▁▁▆▃▇ |
| tinnitus.noises_worry_worst_upset_numeric | 11967 | 0.14 | 0.97 | 0.75 | 0 | 0 | 1 | 1 | 3 | ▅▇▁▃▁ |
Variable type: POSIXct
| skim_variable | n_missing | complete_rate | min | max | median | n_unique |
|---|---|---|---|---|---|---|
| startDate.coping | 0 | 1 | 2020-05-01 18:29:32 | 2020-07-14 08:28:41 | 2020-05-11 06:34:29 | 13755 |
Definition of prepandemic and baseline
Exlcude people who have joined GLAD/EDGI after the pandemic began, sensitivity analyses done on the cut off’s we have chosen. Potentially GLAD/EDGI particiapnts between January to April. EDGI launched on February 24th.
Prepandemic GLAD/EDGI = Prepandemic (GLAD/EDGI sign-up questionnaire)
Retrospective = COPING/RAMP sign up questionnaire; only of those participants who have reported a change in symptoms
Baseline = COPING/RAMP sign up questionnaire
Dates for the definition of prepandemic
Calculate the time difference between starting the COPING questionnaire and the beginning of the pandemic
Descriptive Statistics
dat$time_diff_coping_first_case_uk_jan_31
N: 13989
time_diff_coping_first_case_uk_jan_31
--------------- ---------------------------------------
Mean 14.65
Std.Dev 1.09
Min 13.11
Median 14.47
Max 23.62
N.Valid 13989.00
Pct.Valid 100.00Calculate the time difference between sign up questionnaire and the beginning of the pandemic
Testing 3, 6, and 9 months before pandemic
Calculate the time difference between sign up questionnaire and COPING questionnaire
Proportion of people signed up over one year ago
Proportion of people signed up over half a year ago
#Total score comparison between PHQ, PCL and GAD, prepandemic, retrospecive and baseline PHQ difference scores
Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
-17.000 0.000 2.000 2.372 4.000 24.000 7958 GAD difference scores
Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
-15.000 0.000 1.000 2.002 3.000 21.000 8637 PCL difference scores NOTE: Only computed baseline and prepandemic differences as the retro account here isn’t actually retrospective, but whether the reported baseline scores are due to the pandemic.
Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
0.00 0.00 1.00 1.93 3.00 6.00 13357 Frequencies
dat$pcl.stressful_experience_repeated_images_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
No 2640 87.71 87.71 18.87 18.87
Yes 370 12.29 100.00 2.64 21.52
<NA> 10979 78.48 100.00
Total 13989 100.00 100.00 100.00 100.00Frequencies
dat$pcl.stressful_situation_avoiding_activities_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
No 1380 84.30 84.30 9.86 9.86
Yes 257 15.70 100.00 1.84 11.70
<NA> 12352 88.30 100.00
Total 13989 100.00 100.00 100.00 100.00Frequencies
dat$pcl.feeling_irritable_or_having_angry_outbursts_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
No 2118 51.45 51.45 15.14 15.14
Yes 1999 48.55 100.00 14.29 29.43
<NA> 9872 70.57 100.00
Total 13989 100.00 100.00 100.00 100.00Frequencies
dat$pcl.stressful_experience_upset_reminded_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
No 3248 84.08 84.08 23.22 23.22
Yes 615 15.92 100.00 4.40 27.61
<NA> 10126 72.39 100.00
Total 13989 100.00 100.00 100.00 100.00Frequencies
dat$pcl.cut_people_feeling_distant_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
No 1626 30.61 30.61 11.62 11.62
Yes 3686 69.39 100.00 26.35 37.97
<NA> 8677 62.03 100.00
Total 13989 100.00 100.00 100.00 100.00Frequencies
dat$pcl.difficulty_concentrating_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
No 2339 50.86 50.86 16.72 16.72
Yes 2260 49.14 100.00 16.16 32.88
<NA> 9390 67.12 100.00
Total 13989 100.00 100.00 100.00 100.00OCI-R difference scores
Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
-43.000 -6.000 -4.000 -4.187 -1.000 20.000 13486 #Data level groups Identify which data (prepan, retro and baseline) each participant has.
Baseline and retrospective data Baseline data only
6031 7725
Retrospective data only
15 GAD
Baseline and retrospective data Baseline data only
5352 8148
Retrospective data only
6 PCL
Baseline and retrospective data Baseline data only
632 12514 OCI-R
Baseline and retrospective data Baseline data only
503 2
Retrospective data only
474 #Read in respiratory data
GLAD respiratory
Select respiratory variables
EDGI respiratory
Select respiratory variables
NBR respiratory
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "subjectid"
[5] "respiratory.unusual_shortness_breath_diarrhoea"
[6] "respiratory.date_symptom_experience.txt"
[7] "respiratory.worst_ill_feel"
[8] "respiratory.chillsfeverhigh_temperature"
[9] "respiratory.persistent_cough"
[10] "respiratory.shortness_of_breath"
[11] "respiratory.body_achemuscle_pain"
[12] "respiratory.sore_throat"
[13] "respiratory.headache"
[14] "respiratory.sneezing"
[15] "respiratory.runny_nose"
[16] "respiratory.blocked_nose"
[17] "respiratory.feeling_generally_unwell"
[18] "respiratory.feeling_tiredfatigued"
[19] "respiratory.diarrhoea"
[20] "respiratory.hoarse_voice"
[21] "respiratory.unusual_chest_pain_chest"
[22] "respiratory.unusual_abdominal_pain"
[23] "respiratory.feeling_confused_disorientated_drowsy"
[24] "respiratory.skipping_meals_because_you_felt_unwell"
[25] "respiratory.was_your_persistent_cough_dry_"
[26] "respiratory.was_your_sense_of_smell_impaired"
[27] "respiratory.was_your_sense_of_taste_impaired"
[28] "respiratory.what_was_the_highest_temperature_you_had"
[29] "respiratory.throat_swab_coronavirus_nose"
[30] "respiratory.throat_swab_test_nose"
[31] "respiratory.coronavirus_antibody_test"
[32] "respiratory.results_antibody_test"
[33] "respiratory.paracetamol_panadol_anadin"
[34] "respiratory.ibuprofen_nurofen_brufen_and_calprofen_syrup"
[35] "respiratory.aspirin"
[36] "respiratory.naproxen"
[37] "respiratory.cold_and_flu_remedies_please_specify"
[38] "respiratory.cold_and_flu_remedies_please_specify_text.txt"
[39] "respiratory.none_of_these"
[40] "respiratory.i_called_nhs111"
[41] "respiratory.i_called_my_gp"
[42] "respiratory.face_appointment_face"
[43] "respiratory.hospital_accident_attended_emergency"
[44] "respiratory.field_hospital_hospital_admitted"
[45] "respiratory.none_of_these.1"
[46] "respiratory.what_dates_were_you_admitted_to_hospital.txt"
[47] "respiratory.what_dates_were_you_discharged_from_hospital.txt"
[48] "respiratory.none"
[49] "respiratory.fluids_oxygen"
[50] "respiratory.invasive_ventilation"
[51] "respiratory.invasive_ventilation.1"
[52] "respiratory.have_your_symptoms_gone_awayresolved_now"
[53] "respiratory.feel_healthy_date_back.txt"
[54] "respiratory.february_injury_experienced_medical"
[55] "respiratory.was_the_illness_or_injury_lifethreatening"
[56] "respiratory.admitted_treatment_hospital_injury"
[57] "respiratory.lasting_disability_injury_result"
[58] "respiratory.born_child_birth_defect"
[59] "respiratory.nature_recent_illness_injury.txt"
[60] "respiratory.prescribed_regular_medication_february"
[61] "respiratory.addition_of_a_new_medication"
[62] "respiratory.stopping_medication_previously_taking"
[63] "respiratory.dose_change_medication_previously"
[64] "respiratory.enter_frequency_medication_packaging"
[65] "respiratory.enter_frequency_medication_packaging.1"
[66] "respiratory.enter_frequency_medication_packaging.2"
[67] "respiratory.enter_frequency_medication_packaging.3"
[68] "respiratory.enter_frequency_medication_packaging.4"
[69] "respiratory.prescribed_additional_february_medication"
[70] "respiratory.enter_frequency_medication_packaging.5"
[71] "respiratory.enter_frequency_medication_packaging.6"
[72] "respiratory.enter_frequency_medication_packaging.7"
[73] "respiratory.enter_frequency_medication_packaging.8"
[74] "respiratory.enter_frequency_medication_packaging.9"
[75] "respiratory.add_discontinued_medication.txt"
[76] "respiratory.stopped_medication_previously_taking"
[77] "respiratory.add_discontinued_medication.txt.1"
[78] "respiratory.dosing_regimen_enter_frequency"
[79] "respiratory.dosing_regimen_enter_frequency.1"
[80] "respiratory.dosing_regimen_enter_frequency.2"
[81] "respiratory.dosing_regimen_enter_frequency.3"
[82] "respiratory.dosing_regimen_enter_frequency.4"
[83] "respiratory.prescribed_medicines_treatments"
[84] "respiratory.medication_1"
[85] "respiratory.medication_2"
[86] "respiratory.medication_3"
[87] "respiratory.medication_4"
[88] "respiratory.medication_5"
[89] "respiratory.medication_6"
[90] "respiratory.medication_7"
[91] "respiratory.medication_8"
[92] "respiratory.medication_9"
[93] "respiratory.medication_10"
[94] "respiratory.medication_11"
[95] "respiratory.medication_12"
[96] "respiratory.medication_13"
[97] "respiratory.medication_14"
[98] "respiratory.medication_15"
[99] "respiratory.medication_16"
[100] "respiratory.medication_17"
[101] "respiratory.medication_18"
[102] "respiratory.medication_19"
[103] "respiratory.medication_20"
[104] "respiratory.qqid125062240231choicetextentryvalue21"
[105] "respiratory.qqid125062240231choicetextentryvalue31"
[106] "respiratory.qqid125062240231choicetextentryvalue41"
[107] "respiratory.qqid125062240231choicetextentryvalue51"
[108] "respiratory.qqid125062240231choicetextentryvalue61"
[109] "respiratory.qqid125062240231choicetextentryvalue71"
[110] "respiratory.qqid125062240231choicetextentryvalue81"
[111] "respiratory.qqid125062240231choicetextentryvalue91"
[112] "respiratory.qqid125062240231choicetextentryvalue101"
[113] "respiratory.qqid125062240231choicetextentryvalue111"
[114] "respiratory.qqid125062240231choicetextentryvalue121"
[115] "respiratory.qqid125062240231choicetextentryvalue131"
[116] "respiratory.qqid125062240231choicetextentryvalue141"
[117] "respiratory.qqid125062240231choicetextentryvalue151"
[118] "respiratory.qqid125062240231choicetextentryvalue161"
[119] "respiratory.qqid125062240231choicetextentryvalue171"
[120] "respiratory.qqid125062240231choicetextentryvalue181"
[121] "respiratory.qqid125062240231choicetextentryvalue191"
[122] "respiratory.qqid125062240231choicetextentryvalue201"
[123] "respiratory.qqid125062240231choicetextentryvalue211"
[124] "respiratory.qqid125062240231choicetextentryvalue21.1"
[125] "respiratory.qqid125062240231choicetextentryvalue31.1"
[126] "respiratory.qqid125062240231choicetextentryvalue41.1"
[127] "respiratory.qqid125062240231choicetextentryvalue51.1"
[128] "respiratory.qqid125062240231choicetextentryvalue61.1"
[129] "respiratory.qqid125062240231choicetextentryvalue71.1"
[130] "respiratory.qqid125062240231choicetextentryvalue81.1"
[131] "respiratory.qqid125062240231choicetextentryvalue91.1"
[132] "respiratory.qqid125062240231choicetextentryvalue101.1"
[133] "respiratory.qqid125062240231choicetextentryvalue111.1"
[134] "respiratory.qqid125062240231choicetextentryvalue121.1"
[135] "respiratory.qqid125062240231choicetextentryvalue131.1"
[136] "respiratory.qqid125062240231choicetextentryvalue141.1"
[137] "respiratory.qqid125062240231choicetextentryvalue151.1"
[138] "respiratory.qqid125062240231choicetextentryvalue161.1"
[139] "respiratory.qqid125062240231choicetextentryvalue171.1"
[140] "respiratory.qqid125062240231choicetextentryvalue181.1"
[141] "respiratory.qqid125062240231choicetextentryvalue191.1"
[142] "respiratory.qqid125062240231choicetextentryvalue201.1"
[143] "respiratory.qqid125062240231choicetextentryvalue211.1"
[144] "respiratory.qqid125062240231choicetextentryvalue21.2"
[145] "respiratory.qqid125062240231choicetextentryvalue31.2"
[146] "respiratory.qqid125062240231choicetextentryvalue41.2"
[147] "respiratory.qqid125062240231choicetextentryvalue51.2"
[148] "respiratory.qqid125062240231choicetextentryvalue61.2"
[149] "respiratory.qqid125062240231choicetextentryvalue71.2"
[150] "respiratory.qqid125062240231choicetextentryvalue81.2"
[151] "respiratory.qqid125062240231choicetextentryvalue91.2"
[152] "respiratory.qqid125062240231choicetextentryvalue101.2"
[153] "respiratory.qqid125062240231choicetextentryvalue111.2"
[154] "respiratory.qqid125062240231choicetextentryvalue121.2"
[155] "respiratory.qqid125062240231choicetextentryvalue131.2"
[156] "respiratory.qqid125062240231choicetextentryvalue141.2"
[157] "respiratory.qqid125062240231choicetextentryvalue151.2"
[158] "respiratory.qqid125062240231choicetextentryvalue161.2"
[159] "respiratory.qqid125062240231choicetextentryvalue171.2"
[160] "respiratory.qqid125062240231choicetextentryvalue181.2"
[161] "respiratory.qqid125062240231choicetextentryvalue191.2"
[162] "respiratory.qqid125062240231choicetextentryvalue201.2"
[163] "respiratory.qqid125062240231choicetextentryvalue211.2"
[164] "respiratory.qqid125062240231choicetextentryvalue21.3"
[165] "respiratory.qqid125062240231choicetextentryvalue31.3"
[166] "respiratory.qqid125062240231choicetextentryvalue41.3"
[167] "respiratory.qqid125062240231choicetextentryvalue51.3"
[168] "respiratory.qqid125062240231choicetextentryvalue61.3"
[169] "respiratory.qqid125062240231choicetextentryvalue71.3"
[170] "respiratory.qqid125062240231choicetextentryvalue81.3"
[171] "respiratory.qqid125062240231choicetextentryvalue91.3"
[172] "respiratory.qqid125062240231choicetextentryvalue101.3"
[173] "respiratory.qqid125062240231choicetextentryvalue111.3"
[174] "respiratory.qqid125062240231choicetextentryvalue121.3"
[175] "respiratory.qqid125062240231choicetextentryvalue131.3"
[176] "respiratory.qqid125062240231choicetextentryvalue141.3"
[177] "respiratory.qqid125062240231choicetextentryvalue151.3"
[178] "respiratory.qqid125062240231choicetextentryvalue161.3"
[179] "respiratory.qqid125062240231choicetextentryvalue171.3"
[180] "respiratory.qqid125062240231choicetextentryvalue181.3"
[181] "respiratory.qqid125062240231choicetextentryvalue191.3"
[182] "respiratory.qqid125062240231choicetextentryvalue201.3"
[183] "respiratory.qqid125062240231choicetextentryvalue211.3" Select respiratory variables
[1] 173RAMP respiratory
Select respiratory variables
#Distribution of likert scale COVID-19 symptoms in COPING
Warning: Removed 14248 rows containing non-finite values (stat_count).
Warning: Removed 14242 rows containing non-finite values (stat_count).
Warning: Removed 14250 rows containing non-finite values (stat_count).
#Choosing cut-offs for the likert scale symptoms of “no symptoms”, “mild symptoms”, “moderate symptoms” and “severe symptoms” for the fatigue, persistent cough and skipped meals variables. Coding: 0 = No symptoms 1 = Mild symptoms 2 = Moderate symptoms 3 = Severe symptoms
Results: Persistent cough: “Mild symptoms” as cut off Fatigue: “Severe symptoms” as cut off Skipped meals: “Moderate symptoms” as cut off
[1] 0.302976269.70238%
1 [1] 0.0879120491.2088%
3 [1] 0.19202180.7979%
1 Creating binary groups for COVID symptoms
Frequencies of binary COVID symptoms
Frequencies
respiratory.raw.id$respiratory.anosmia_binary
Type: Numeric
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
0 1902 68.69 68.69 10.90 10.90
1 867 31.31 100.00 4.97 15.87
<NA> 14678 84.13 100.00
Total 17447 100.00 100.00 100.00 100.00Frequencies
respiratory.raw.id$respiratory.pcough_binary
Type: Numeric
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
0 1563 48.86 48.86 8.96 8.96
1 1636 51.14 100.00 9.38 18.34
<NA> 14248 81.66 100.00
Total 17447 100.00 100.00 100.00 100.00Frequencies
respiratory.raw.id$respiratory.fatigue_binary
Type: Numeric
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
0 2516 78.50 78.50 14.42 14.42
1 689 21.50 100.00 3.95 18.37
<NA> 14242 81.63 100.00
Total 17447 100.00 100.00 100.00 100.00Frequencies
respiratory.raw.id$respiratory.skipped_meals_binary
Type: Numeric
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
0 1911 59.77 59.77 10.95 10.95
1 1286 40.23 100.00 7.37 18.32
<NA> 14250 81.68 100.00
Total 17447 100.00 100.00 100.00 100.00Rename respiratory dataset joined to main dataset
Probable COVID-19 case identification
Algorithm from Menni et al. to identify probable COVID-19 Variables required: - Sex: 0 Female, 1 Male - Other binary variables: 0 No, 1 Yes
- “respiratory.anosmia_binary”: loss of smell or taste
- “respiratory.pcough_binary”: Persistent cough - “respiratory.fatigue_binary”: Severe fatigue - “respiratory.skipped_meals_binary”: Skipped meals
The COVID prediction model has coded the sexes opposite to our data set
Sex is no available in the RAMP dataset, therefore a proxy sex variable is created whereby Gender = Male and Transgender = No.
Age is not available in RAMP, only categorical age. We will assign each individual the middle value of each age category.
Frequencies
dat.coping$covid_symptoms
Type: Numeric
Freq % Valid % Total
----------- ------- --------- ---------
0 11944 85.38 85.38
1 2045 14.62 14.62
<NA> 0 0.00
Total 13989 100.00 100.00Frequencies
dat.coping$covid_odds_ratio_50
Type: Factor
Freq % Valid % Total
-------------------- ------- --------- ---------
No COVID 1437 70.27 10.27
Probable COVID 608 29.73 4.35
<NA> 11944 85.38
Total 13989 100.00 100.00Probable COVID case including the routing question
Frequencies
dat.coping$covid_probable_case_incl_screening
Type: Factor
Freq % Valid % Total
-------------------- ------- --------- ---------
No COVID 12016 95.18 85.90
Probable COVID 608 4.82 4.35
<NA> 1365 9.76
Total 13989 100.00 100.00